Strain Fitness in Shewanella loihica PV-4 around Shew_2784

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2783 and Shew_2784 are separated by 511 nucleotidesShew_2784 and Shew_2785 are separated by 232 nucleotidesShew_2785 and Shew_2786 are separated by 100 nucleotides Shew_2783: Shew_2783 - peptidase U32 (RefSeq), at 3,292,157 to 3,293,518 _2783 Shew_2784: Shew_2784 - phosphoesterase, PA-phosphatase related (RefSeq), at 3,294,030 to 3,295,358 _2784 Shew_2785: Shew_2785 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 3,295,591 to 3,295,848 _2785 Shew_2786: Shew_2786 - sterol-binding domain-containing protein (RefSeq), at 3,295,949 to 3,296,461 _2786 Position (kb) 3294 3295 3296Strain fitness (log2 ratio) -1 0 1at 3293.354 kb on - strand, within Shew_2783at 3293.619 kb on + strandat 3294.067 kb on + strandat 3294.276 kb on + strand, within Shew_2784at 3294.284 kb on - strand, within Shew_2784at 3294.320 kb on + strand, within Shew_2784at 3294.583 kb on + strand, within Shew_2784at 3294.593 kb on + strand, within Shew_2784at 3294.768 kb on + strand, within Shew_2784at 3294.802 kb on + strand, within Shew_2784at 3295.019 kb on + strand, within Shew_2784at 3295.244 kb on + strandat 3295.254 kb on + strandat 3295.260 kb on + strandat 3295.720 kb on + strand, within Shew_2785at 3295.912 kb on + strandat 3295.934 kb on + strandat 3296.232 kb on + strand, within Shew_2786at 3296.310 kb on + strand, within Shew_2786

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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3,293,354 - Shew_2783 0.88 +0.4
3,293,619 + +0.1
3,294,067 + +0.3
3,294,276 + Shew_2784 0.19 +0.2
3,294,284 - Shew_2784 0.19 +0.1
3,294,320 + Shew_2784 0.22 +0.2
3,294,583 + Shew_2784 0.42 +0.5
3,294,593 + Shew_2784 0.42 -0.1
3,294,768 + Shew_2784 0.56 -0.2
3,294,802 + Shew_2784 0.58 +0.9
3,295,019 + Shew_2784 0.74 +0.6
3,295,244 + +0.0
3,295,254 + -0.1
3,295,260 + +0.2
3,295,720 + Shew_2785 0.50 +0.1
3,295,912 + +0.1
3,295,934 + +0.0
3,296,232 + Shew_2786 0.55 +1.1
3,296,310 + Shew_2786 0.70 -0.3

Or see this region's nucleotide sequence