Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2639 and purU are separated by 108 nucleotides purU and Shew_2641 are separated by 33 nucleotides Shew_2641 and Shew_2642 overlap by 49 nucleotides Shew_2642 and Shew_2643 are separated by 373 nucleotides
Shew_2639: Shew_2639 - hypothetical protein (RefSeq), at 3,115,199 to 3,115,543
_2639
Shew_2640: purU - formyltetrahydrofolate deformylase (RefSeq), at 3,115,652 to 3,116,485
purU
Shew_2641: Shew_2641 - PTS system, glucose-like IIB subunint (RefSeq), at 3,116,519 to 3,117,991
_2641
Shew_2642: Shew_2642 - flavodoxin (RefSeq), at 3,117,943 to 3,118,407
_2642
Shew_2643: Shew_2643 - pseudouridylate synthase (RefSeq), at 3,118,781 to 3,119,602
_2643
Position (kb)
3116
3117
3118 Strain fitness (log2 ratio)
-1
0
1 at 3115.652 kb on - strand at 3115.713 kb on + strand at 3115.721 kb on - strand at 3115.882 kb on + strand, within purU at 3116.071 kb on - strand, within purU at 3116.127 kb on - strand, within purU at 3116.421 kb on + strand at 3116.421 kb on + strand at 3116.429 kb on - strand at 3116.440 kb on + strand at 3116.448 kb on - strand at 3116.945 kb on + strand, within Shew_2641 at 3117.285 kb on - strand, within Shew_2641 at 3117.459 kb on + strand, within Shew_2641 at 3118.241 kb on - strand, within Shew_2642
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 3,115,652 - -0.7 3,115,713 + +1.4 3,115,721 - -0.3 3,115,882 + purU Shew_2640 0.28 -0.1 3,116,071 - purU Shew_2640 0.50 -0.4 3,116,127 - purU Shew_2640 0.57 -0.1 3,116,421 + -0.2 3,116,421 + +0.2 3,116,429 - -0.8 3,116,440 + +0.2 3,116,448 - +0.4 3,116,945 + Shew_2641 0.29 -0.1 3,117,285 - Shew_2641 0.52 -0.6 3,117,459 + Shew_2641 0.64 +0.1 3,118,241 - Shew_2642 0.64 -0.1
Or see this region's nucleotide sequence