Strain Fitness in Shewanella loihica PV-4 around Shew_2557

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2556 and Shew_2557 are separated by 137 nucleotidesShew_2557 and Shew_2558 are separated by 404 nucleotides Shew_2556: Shew_2556 - acyl-CoA thioesterase II (RefSeq), at 3,012,950 to 3,013,813 _2556 Shew_2557: Shew_2557 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,013,951 to 3,014,871 _2557 Shew_2558: Shew_2558 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq), at 3,015,276 to 3,016,148 _2558 Position (kb) 3013 3014 3015Strain fitness (log2 ratio) -1 0 1at 3013.276 kb on - strand, within Shew_2556at 3013.549 kb on + strand, within Shew_2556at 3013.724 kb on + strand, within Shew_2556at 3013.743 kb on + strandat 3013.875 kb on + strandat 3014.203 kb on - strand, within Shew_2557at 3014.249 kb on + strand, within Shew_2557at 3014.479 kb on - strand, within Shew_2557at 3014.629 kb on + strand, within Shew_2557at 3014.702 kb on - strand, within Shew_2557at 3014.732 kb on - strand, within Shew_2557at 3014.798 kb on - strandat 3015.639 kb on - strand, within Shew_2558

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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3,013,276 - Shew_2556 0.38 -0.2
3,013,549 + Shew_2556 0.69 -1.2
3,013,724 + Shew_2556 0.90 -1.5
3,013,743 + -0.9
3,013,875 + +0.5
3,014,203 - Shew_2557 0.27 -0.7
3,014,249 + Shew_2557 0.32 -1.6
3,014,479 - Shew_2557 0.57 +0.1
3,014,629 + Shew_2557 0.74 -0.1
3,014,702 - Shew_2557 0.82 +0.1
3,014,732 - Shew_2557 0.85 -0.6
3,014,798 - -0.0
3,015,639 - Shew_2558 0.42 +0.5

Or see this region's nucleotide sequence