Strain Fitness in Shewanella loihica PV-4 around Shew_2098

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2097 and Shew_2098 are separated by 235 nucleotidesShew_2098 and Shew_2099 overlap by 27 nucleotidesShew_2099 and Shew_2100 are separated by 154 nucleotides Shew_2097: Shew_2097 - hypothetical protein (RefSeq), at 2,425,383 to 2,426,567 _2097 Shew_2098: Shew_2098 - hemolysin III family channel protein (RefSeq), at 2,426,803 to 2,427,513 _2098 Shew_2099: Shew_2099 - DTW domain-containing protein (RefSeq), at 2,427,487 to 2,428,056 _2099 Shew_2100: Shew_2100 - DNA polymerase III, alpha subunit (RefSeq), at 2,428,211 to 2,431,447 _2100 Position (kb) 2426 2427 2428Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2426.077 kb on - strand, within Shew_2097at 2426.796 kb on - strandat 2426.890 kb on + strand, within Shew_2098at 2427.183 kb on - strand, within Shew_2098at 2427.231 kb on + strand, within Shew_2098at 2427.663 kb on - strand, within Shew_2099at 2427.944 kb on + strand, within Shew_2099at 2427.954 kb on + strand, within Shew_2099at 2428.137 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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2,426,077 - Shew_2097 0.59 +0.1
2,426,796 - +0.1
2,426,890 + Shew_2098 0.12 +0.5
2,427,183 - Shew_2098 0.53 -4.0
2,427,231 + Shew_2098 0.60 +0.2
2,427,663 - Shew_2099 0.31 +0.1
2,427,944 + Shew_2099 0.80 -0.1
2,427,954 + Shew_2099 0.82 +0.1
2,428,137 - +0.1

Or see this region's nucleotide sequence