Strain Fitness in Shewanella loihica PV-4 around Shew_1987

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1985 and Shew_1986 are separated by 12 nucleotidesShew_1986 and Shew_1987 are separated by 15 nucleotidesShew_1987 and Shew_1988 overlap by 1 nucleotides Shew_1985: Shew_1985 - cytochrome c oxidase, cbb3-type, subunit I (RefSeq), at 2,297,760 to 2,299,187 _1985 Shew_1986: Shew_1986 - cytochrome c oxidase, cbb3-type, subunit II (RefSeq), at 2,299,200 to 2,299,805 _1986 Shew_1987: Shew_1987 - Cbb3-type cytochrome oxidase component (RefSeq), at 2,299,821 to 2,299,988 _1987 Shew_1988: Shew_1988 - cytochrome c oxidase, cbb3-type, subunit III (RefSeq), at 2,299,988 to 2,300,959 _1988 Position (kb) 2299 2300Strain fitness (log2 ratio) -2 -1 0 1at 2298.906 kb on - strand, within Shew_1985at 2299.292 kb on - strand, within Shew_1986at 2299.892 kb on + strand, within Shew_1987at 2299.982 kb on - strandat 2300.241 kb on - strand, within Shew_1988

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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2,298,906 - Shew_1985 0.80 -0.9
2,299,292 - Shew_1986 0.15 -0.8
2,299,892 + Shew_1987 0.42 -0.6
2,299,982 - -2.0
2,300,241 - Shew_1988 0.26 -0.4

Or see this region's nucleotide sequence