Strain Fitness in Shewanella loihica PV-4 around Shew_1850

Experiment: 2-Furfuraldehyde 0.0625 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1849 and Shew_1850 are separated by 292 nucleotidesShew_1850 and Shew_1851 are separated by 163 nucleotides Shew_1849: Shew_1849 - NlpB/DapX family lipoprotein (RefSeq), at 2,124,205 to 2,125,326 _1849 Shew_1850: Shew_1850 - diguanylate cyclase/phosphodiesterase with GAF sensor (RefSeq), at 2,125,619 to 2,127,991 _1850 Shew_1851: Shew_1851 - RND family efflux transporter MFP subunit (RefSeq), at 2,128,155 to 2,129,240 _1851 Position (kb) 2125 2126 2127 2128Strain fitness (log2 ratio) -1 0 1at 2125.646 kb on - strandat 2125.916 kb on - strand, within Shew_1850at 2126.263 kb on - strand, within Shew_1850at 2126.891 kb on + strand, within Shew_1850at 2127.186 kb on - strand, within Shew_1850at 2127.191 kb on - strand, within Shew_1850at 2127.191 kb on - strand, within Shew_1850at 2127.327 kb on - strand, within Shew_1850at 2127.750 kb on - strand, within Shew_1850at 2127.750 kb on - strand, within Shew_1850at 2127.877 kb on + strandat 2128.571 kb on - strand, within Shew_1851

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
remove
2,125,646 - +0.1
2,125,916 - Shew_1850 0.13 +0.2
2,126,263 - Shew_1850 0.27 -0.9
2,126,891 + Shew_1850 0.54 -0.2
2,127,186 - Shew_1850 0.66 +0.7
2,127,191 - Shew_1850 0.66 -0.9
2,127,191 - Shew_1850 0.66 +1.5
2,127,327 - Shew_1850 0.72 +1.0
2,127,750 - Shew_1850 0.90 +0.2
2,127,750 - Shew_1850 0.90 +0.6
2,127,877 + -0.0
2,128,571 - Shew_1851 0.38 -0.1

Or see this region's nucleotide sequence