Strain Fitness in Shewanella loihica PV-4 around Shew_1850
Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.0625 vol% |
|---|---|---|---|---|---|
| remove | |||||
| 2,125,646 | - | +0.1 | |||
| 2,125,916 | - | Shew_1850 | 0.13 | +0.2 | |
| 2,126,263 | - | Shew_1850 | 0.27 | -0.9 | |
| 2,126,891 | + | Shew_1850 | 0.54 | -0.2 | |
| 2,127,186 | - | Shew_1850 | 0.66 | +0.7 | |
| 2,127,191 | - | Shew_1850 | 0.66 | -0.9 | |
| 2,127,191 | - | Shew_1850 | 0.66 | +1.5 | |
| 2,127,327 | - | Shew_1850 | 0.72 | +1.0 | |
| 2,127,750 | - | Shew_1850 | 0.90 | +0.2 | |
| 2,127,750 | - | Shew_1850 | 0.90 | +0.6 | |
| 2,127,877 | + | -0.0 | |||
| 2,128,571 | - | Shew_1851 | 0.38 | -0.1 |
Or see this region's nucleotide sequence