Strain Fitness in Shewanella loihica PV-4 around Shew_1660

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1659 and Shew_1660 are separated by 220 nucleotidesShew_1660 and fur are separated by 90 nucleotidesfur and Shew_1662 are separated by 310 nucleotides Shew_1659: Shew_1659 - ferredoxin-dependent glutamate synthase (RefSeq), at 1,908,540 to 1,910,213 _1659 Shew_1660: Shew_1660 - GCN5-related N-acetyltransferase (RefSeq), at 1,910,434 to 1,910,934 _1660 Shew_1661: fur - ferric uptake regulator (RefSeq), at 1,911,025 to 1,911,456 fur Shew_1662: Shew_1662 - NAD-dependent deacetylase (RefSeq), at 1,911,767 to 1,912,513 _1662 Position (kb) 1910 1911Strain fitness (log2 ratio) -1 0 1 2 3at 1909.585 kb on - strand, within Shew_1659at 1909.792 kb on + strand, within Shew_1659at 1910.042 kb on + strand, within Shew_1659at 1910.097 kb on - strandat 1910.107 kb on - strandat 1910.640 kb on + strand, within Shew_1660at 1910.926 kb on + strandat 1911.080 kb on - strand, within fur

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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1,909,585 - Shew_1659 0.62 +0.0
1,909,792 + Shew_1659 0.75 -0.1
1,910,042 + Shew_1659 0.90 +0.5
1,910,097 - +0.2
1,910,107 - +0.1
1,910,640 + Shew_1660 0.41 -1.2
1,910,926 + +0.0
1,911,080 - fur Shew_1661 0.13 +3.5

Or see this region's nucleotide sequence