Strain Fitness in Shewanella loihica PV-4 around Shew_1263

Experiment: 2-Furfuraldehyde 0.0625 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1261 and Shew_1262 are separated by 140 nucleotidesShew_1262 and Shew_1263 are separated by 147 nucleotidesShew_1263 and Shew_1264 overlap by 4 nucleotides Shew_1261: Shew_1261 - type III restriction enzyme, res subunit (RefSeq), at 1,457,762 to 1,460,347 _1261 Shew_1262: Shew_1262 - hypothetical protein (RefSeq), at 1,460,488 to 1,460,853 _1262 Shew_1263: Shew_1263 - hypothetical protein (RefSeq), at 1,461,001 to 1,461,984 _1263 Shew_1264: Shew_1264 - UvrD/REP helicase (RefSeq), at 1,461,981 to 1,464,017 _1264 Position (kb) 1461 1462Strain fitness (log2 ratio) -1 0 1at 1460.445 kb on - strandat 1461.019 kb on + strandat 1461.066 kb on - strandat 1461.076 kb on - strandat 1461.577 kb on + strand, within Shew_1263at 1461.579 kb on + strand, within Shew_1263at 1461.663 kb on - strand, within Shew_1263at 1461.844 kb on - strand, within Shew_1263at 1461.925 kb on + strandat 1462.061 kb on - strandat 1462.082 kb on + strandat 1462.191 kb on + strand, within Shew_1264

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
remove
1,460,445 - +0.2
1,461,019 + -0.2
1,461,066 - +0.6
1,461,076 - +0.3
1,461,577 + Shew_1263 0.59 +1.5
1,461,579 + Shew_1263 0.59 -0.0
1,461,663 - Shew_1263 0.67 +0.9
1,461,844 - Shew_1263 0.86 +0.2
1,461,925 + +0.3
1,462,061 - +0.9
1,462,082 + +0.2
1,462,191 + Shew_1264 0.10 -1.1

Or see this region's nucleotide sequence