Strain Fitness in Shewanella loihica PV-4 around Shew_1079

Experiment: 2-Furfuraldehyde 0.0625 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Furfuraldehyde 0.0625 vol%
1,240,783	-		Shew_1078	0.68	+0.6
1,240,842	+		Shew_1078	0.77	+0.6
1,240,971	-				+0.6
1,241,040	-				-0.1
1,241,041	-				+0.5
1,241,086	+				-0.4
1,241,094	-				+0.1
1,241,099	-				+0.1
1,241,189	+				-1.1
1,241,197	-				+0.2
1,241,461	+				+0.2
1,241,496	+				-0.2
1,241,682	+				+2.6
1,241,690	-				+0.2
1,241,690	-				-0.2
1,241,753	-				-0.1
1,241,907	+				+0.1
1,242,012	+	thrA	Shew_1079	0.13	-0.3
1,242,527	+	thrA	Shew_1079	0.34	+0.2
1,242,706	-	thrA	Shew_1079	0.41	-0.3
1,242,991	+	thrA	Shew_1079	0.52	+0.2
1,243,125	+	thrA	Shew_1079	0.58	-0.1
1,243,338	+	thrA	Shew_1079	0.66	-0.5
1,243,338	+	thrA	Shew_1079	0.66	-0.6
1,243,346	-	thrA	Shew_1079	0.67	-1.1
1,243,727	+	thrA	Shew_1079	0.82	-0.1
1,243,735	-	thrA	Shew_1079	0.83	+0.1
1,243,735	-	thrA	Shew_1079	0.83	-0.5
1,244,135	+				-0.2
1,244,159	-				-0.6
1,244,415	+		Shew_1080	0.26	+0.5
1,244,689	-		Shew_1080	0.55	-0.7