Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0802 and Shew_0803 are separated by 34 nucleotides Shew_0803 and Shew_0804 overlap by 4 nucleotides Shew_0804 and Shew_0805 overlap by 4 nucleotides
Shew_0802: Shew_0802 - chromate transporter (RefSeq), at 914,820 to 916,028
_0802
Shew_0803: Shew_0803 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 916,063 to 917,301
_0803
Shew_0804: Shew_0804 - two component transcriptional regulator (RefSeq), at 917,298 to 918,002
_0804
Shew_0805: Shew_0805 - hypothetical protein (RefSeq), at 917,999 to 918,394
_0805
Position (kb) 916
917
918 Strain fitness (log2 ratio) -1
0
1
2 at 915.104 kb on - strand, within Shew_0802 at 915.498 kb on - strand, within Shew_0802 at 915.629 kb on - strand, within Shew_0802 at 915.640 kb on - strand, within Shew_0802 at 915.699 kb on - strand, within Shew_0802 at 916.039 kb on + strand at 916.139 kb on - strand at 916.373 kb on + strand, within Shew_0803 at 916.401 kb on + strand, within Shew_0803 at 916.742 kb on + strand, within Shew_0803 at 916.896 kb on - strand, within Shew_0803 at 916.896 kb on - strand, within Shew_0803 at 916.948 kb on + strand, within Shew_0803 at 917.049 kb on + strand, within Shew_0803 at 917.057 kb on - strand, within Shew_0803 at 917.149 kb on - strand, within Shew_0803 at 917.195 kb on + strand at 917.463 kb on - strand, within Shew_0804 at 917.678 kb on + strand, within Shew_0804 at 917.720 kb on + strand, within Shew_0804 at 917.728 kb on - strand, within Shew_0804 at 917.810 kb on + strand, within Shew_0804 at 917.930 kb on + strand, within Shew_0804 at 918.201 kb on - strand, within Shew_0805
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 915,104 - Shew_0802 0.23 -0.4 915,498 - Shew_0802 0.56 +0.4 915,629 - Shew_0802 0.67 -0.1 915,640 - Shew_0802 0.68 +0.3 915,699 - Shew_0802 0.73 +0.8 916,039 + +2.0 916,139 - +0.1 916,373 + Shew_0803 0.25 -0.1 916,401 + Shew_0803 0.27 +0.1 916,742 + Shew_0803 0.55 +0.3 916,896 - Shew_0803 0.67 +0.0 916,896 - Shew_0803 0.67 +0.2 916,948 + Shew_0803 0.71 -0.1 917,049 + Shew_0803 0.80 +0.3 917,057 - Shew_0803 0.80 -0.1 917,149 - Shew_0803 0.88 +1.2 917,195 + -0.1 917,463 - Shew_0804 0.23 -0.4 917,678 + Shew_0804 0.54 +0.4 917,720 + Shew_0804 0.60 -0.1 917,728 - Shew_0804 0.61 +0.4 917,810 + Shew_0804 0.73 -0.1 917,930 + Shew_0804 0.90 +0.7 918,201 - Shew_0805 0.51 +0.1
Or see this region's nucleotide sequence