Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0598 and Shew_0599 are separated by 544 nucleotides Shew_0599 and Shew_0600 are separated by 65 nucleotides Shew_0600 and Shew_0601 are separated by 594 nucleotides
Shew_0598: Shew_0598 - ATP-dependent RNA helicase DbpA (RefSeq), at 676,581 to 677,987
_0598
Shew_0599: Shew_0599 - hypothetical protein (RefSeq), at 678,532 to 679,308
_0599
Shew_0600: Shew_0600 - hypothetical protein (RefSeq), at 679,374 to 679,688
_0600
Shew_0601: Shew_0601 - hypothetical protein (RefSeq), at 680,283 to 680,669
_0601
Position (kb) 678
679
680 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 677.758 kb on - strand, within Shew_0598 at 677.847 kb on - strand at 677.895 kb on - strand at 677.942 kb on + strand at 677.948 kb on + strand at 677.954 kb on + strand at 677.956 kb on - strand at 677.956 kb on - strand at 677.956 kb on - strand at 677.956 kb on - strand at 678.027 kb on + strand at 678.107 kb on + strand at 678.188 kb on - strand at 678.206 kb on - strand at 678.276 kb on - strand at 678.282 kb on + strand at 678.282 kb on + strand at 678.316 kb on + strand at 678.316 kb on + strand at 678.371 kb on + strand at 678.379 kb on - strand at 678.379 kb on - strand at 678.486 kb on + strand at 678.487 kb on + strand at 678.487 kb on + strand at 678.521 kb on - strand at 678.524 kb on + strand at 678.532 kb on - strand at 678.532 kb on - strand at 678.604 kb on + strand at 678.606 kb on + strand at 678.624 kb on - strand, within Shew_0599 at 678.642 kb on - strand, within Shew_0599 at 678.649 kb on + strand, within Shew_0599 at 678.662 kb on + strand, within Shew_0599 at 678.706 kb on + strand, within Shew_0599 at 678.728 kb on + strand, within Shew_0599 at 678.728 kb on + strand, within Shew_0599 at 678.736 kb on - strand, within Shew_0599 at 678.760 kb on - strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.884 kb on + strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.892 kb on - strand, within Shew_0599 at 678.895 kb on - strand, within Shew_0599 at 678.897 kb on + strand, within Shew_0599 at 678.897 kb on + strand, within Shew_0599 at 678.897 kb on + strand, within Shew_0599 at 678.897 kb on + strand, within Shew_0599 at 678.903 kb on - strand, within Shew_0599 at 678.903 kb on - strand, within Shew_0599 at 678.905 kb on - strand, within Shew_0599 at 678.905 kb on - strand, within Shew_0599 at 678.906 kb on + strand, within Shew_0599 at 678.914 kb on - strand, within Shew_0599 at 678.915 kb on - strand, within Shew_0599 at 678.954 kb on + strand, within Shew_0599 at 678.968 kb on - strand, within Shew_0599 at 678.968 kb on - strand, within Shew_0599 at 678.975 kb on - strand, within Shew_0599 at 679.066 kb on + strand, within Shew_0599 at 679.072 kb on - strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.091 kb on + strand, within Shew_0599 at 679.099 kb on - strand, within Shew_0599 at 679.099 kb on - strand, within Shew_0599 at 679.099 kb on - strand, within Shew_0599 at 679.099 kb on - strand, within Shew_0599 at 679.099 kb on - strand, within Shew_0599 at 679.100 kb on + strand, within Shew_0599 at 679.112 kb on + strand, within Shew_0599 at 679.124 kb on - strand, within Shew_0599 at 679.135 kb on - strand, within Shew_0599 at 679.135 kb on + strand, within Shew_0599 at 679.183 kb on + strand, within Shew_0599 at 679.183 kb on - strand, within Shew_0599 at 679.191 kb on + strand, within Shew_0599 at 679.199 kb on - strand, within Shew_0599 at 679.199 kb on - strand, within Shew_0599 at 679.213 kb on + strand, within Shew_0599 at 679.213 kb on + strand, within Shew_0599 at 679.280 kb on + strand at 679.305 kb on - strand at 679.305 kb on - strand at 679.326 kb on + strand at 679.326 kb on + strand at 679.326 kb on + strand at 679.334 kb on - strand at 679.334 kb on - strand at 679.334 kb on - strand at 679.345 kb on - strand at 679.356 kb on - strand at 679.397 kb on + strand at 679.404 kb on - strand at 679.419 kb on + strand, within Shew_0600 at 679.445 kb on - strand, within Shew_0600 at 679.447 kb on - strand, within Shew_0600 at 679.543 kb on - strand, within Shew_0600 at 679.551 kb on - strand, within Shew_0600 at 679.553 kb on + strand, within Shew_0600 at 679.553 kb on + strand, within Shew_0600 at 679.556 kb on - strand, within Shew_0600 at 679.561 kb on - strand, within Shew_0600 at 679.561 kb on - strand, within Shew_0600 at 679.561 kb on - strand, within Shew_0600 at 679.561 kb on - strand, within Shew_0600 at 679.561 kb on - strand, within Shew_0600 at 679.580 kb on + strand, within Shew_0600 at 679.580 kb on + strand, within Shew_0600 at 679.587 kb on + strand, within Shew_0600 at 679.587 kb on + strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.593 kb on - strand, within Shew_0600 at 679.597 kb on + strand, within Shew_0600 at 679.611 kb on + strand, within Shew_0600 at 679.657 kb on + strand at 679.702 kb on + strand at 679.702 kb on + strand at 679.710 kb on - strand at 679.710 kb on - strand at 679.710 kb on - strand at 679.730 kb on - strand at 679.730 kb on - strand at 679.730 kb on - strand at 679.730 kb on - strand at 679.730 kb on - strand at 679.737 kb on + strand at 679.745 kb on - strand at 679.745 kb on - strand at 679.745 kb on - strand at 679.745 kb on - strand at 679.745 kb on - strand at 679.746 kb on + strand at 679.754 kb on - strand at 679.754 kb on - strand at 679.754 kb on - strand at 679.754 kb on - strand at 679.754 kb on - strand at 679.758 kb on + strand at 679.758 kb on + strand at 679.758 kb on + strand at 679.763 kb on + strand at 679.766 kb on - strand at 679.766 kb on - strand at 679.803 kb on + strand at 679.803 kb on + strand at 679.811 kb on - strand at 679.811 kb on - strand at 679.811 kb on - strand at 679.855 kb on + strand at 679.907 kb on + strand at 679.907 kb on + strand at 679.915 kb on + strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on + strand at 679.915 kb on - strand at 679.923 kb on - strand at 679.923 kb on - strand at 679.930 kb on - strand at 679.968 kb on + strand at 679.983 kb on - strand at 680.003 kb on - strand at 680.060 kb on + strand at 680.060 kb on + strand at 680.060 kb on + strand at 680.060 kb on + strand at 680.060 kb on + strand at 680.060 kb on + strand at 680.066 kb on + strand at 680.068 kb on - strand at 680.068 kb on - strand at 680.068 kb on - strand at 680.068 kb on - strand at 680.074 kb on + strand at 680.075 kb on - strand at 680.082 kb on - strand at 680.084 kb on + strand at 680.089 kb on - strand at 680.116 kb on + strand at 680.164 kb on + strand at 680.164 kb on + strand at 680.164 kb on + strand at 680.164 kb on + strand at 680.172 kb on - strand at 680.172 kb on - strand at 680.172 kb on + strand at 680.174 kb on + strand at 680.220 kb on + strand at 680.220 kb on + strand at 680.221 kb on + strand at 680.223 kb on - strand at 680.228 kb on - strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.244 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 677,758 - Shew_0598 0.84 +0.1 677,847 - -0.4 677,895 - -0.1 677,942 + -0.3 677,948 + -0.3 677,954 + +0.0 677,956 - -2.1 677,956 - +0.5 677,956 - +0.2 677,956 - +1.3 678,027 + -1.5 678,107 + -0.6 678,188 - -0.2 678,206 - -0.5 678,276 - -0.3 678,282 + -0.3 678,282 + -0.7 678,316 + -0.4 678,316 + +0.0 678,371 + +0.2 678,379 - +0.2 678,379 - +0.1 678,486 + -0.9 678,487 + -2.6 678,487 + +0.1 678,521 - -0.1 678,524 + +0.1 678,532 - -0.4 678,532 - -0.4 678,604 + +0.0 678,606 + +0.5 678,624 - Shew_0599 0.12 +0.4 678,642 - Shew_0599 0.14 -0.3 678,649 + Shew_0599 0.15 +0.6 678,662 + Shew_0599 0.17 -0.0 678,706 + Shew_0599 0.22 -1.3 678,728 + Shew_0599 0.25 +0.1 678,728 + Shew_0599 0.25 -0.3 678,736 - Shew_0599 0.26 +0.7 678,760 - Shew_0599 0.29 -0.4 678,884 + Shew_0599 0.45 -0.1 678,884 + Shew_0599 0.45 +0.1 678,884 + Shew_0599 0.45 +0.0 678,884 + Shew_0599 0.45 +0.6 678,884 + Shew_0599 0.45 -0.2 678,884 + Shew_0599 0.45 +0.1 678,884 + Shew_0599 0.45 +0.3 678,884 + Shew_0599 0.45 +0.2 678,884 + Shew_0599 0.45 -0.1 678,884 + Shew_0599 0.45 -0.2 678,884 + Shew_0599 0.45 +0.4 678,884 + Shew_0599 0.45 -0.0 678,892 - Shew_0599 0.46 +0.3 678,892 - Shew_0599 0.46 -0.0 678,892 - Shew_0599 0.46 -0.5 678,892 - Shew_0599 0.46 +0.4 678,892 - Shew_0599 0.46 +0.4 678,892 - Shew_0599 0.46 +0.4 678,892 - Shew_0599 0.46 -0.2 678,892 - Shew_0599 0.46 +0.2 678,892 - Shew_0599 0.46 +0.6 678,892 - Shew_0599 0.46 +0.4 678,892 - Shew_0599 0.46 +0.0 678,895 - Shew_0599 0.47 -0.5 678,897 + Shew_0599 0.47 -0.3 678,897 + Shew_0599 0.47 -0.2 678,897 + Shew_0599 0.47 +0.4 678,897 + Shew_0599 0.47 +0.3 678,903 - Shew_0599 0.48 -1.0 678,903 - Shew_0599 0.48 -0.2 678,905 - Shew_0599 0.48 +0.4 678,905 - Shew_0599 0.48 +0.1 678,906 + Shew_0599 0.48 -0.0 678,914 - Shew_0599 0.49 +0.2 678,915 - Shew_0599 0.49 +0.9 678,954 + Shew_0599 0.54 +0.2 678,968 - Shew_0599 0.56 +0.1 678,968 - Shew_0599 0.56 +0.2 678,975 - Shew_0599 0.57 +0.2 679,066 + Shew_0599 0.69 +0.6 679,072 - Shew_0599 0.69 +0.4 679,091 + Shew_0599 0.72 -0.0 679,091 + Shew_0599 0.72 +0.6 679,091 + Shew_0599 0.72 -0.3 679,091 + Shew_0599 0.72 +0.0 679,091 + Shew_0599 0.72 -2.1 679,091 + Shew_0599 0.72 -0.2 679,091 + Shew_0599 0.72 +0.0 679,091 + Shew_0599 0.72 +0.0 679,091 + Shew_0599 0.72 +1.1 679,091 + Shew_0599 0.72 -0.1 679,091 + Shew_0599 0.72 -0.1 679,099 - Shew_0599 0.73 -0.3 679,099 - Shew_0599 0.73 -0.0 679,099 - Shew_0599 0.73 +0.5 679,099 - Shew_0599 0.73 +0.3 679,099 - Shew_0599 0.73 +0.1 679,100 + Shew_0599 0.73 +0.8 679,112 + Shew_0599 0.75 -0.2 679,124 - Shew_0599 0.76 +0.1 679,135 - Shew_0599 0.78 +1.2 679,135 + Shew_0599 0.78 +0.2 679,183 + Shew_0599 0.84 +0.0 679,183 - Shew_0599 0.84 +1.2 679,191 + Shew_0599 0.85 -0.1 679,199 - Shew_0599 0.86 +1.3 679,199 - Shew_0599 0.86 +0.1 679,213 + Shew_0599 0.88 +0.0 679,213 + Shew_0599 0.88 +0.2 679,280 + +0.7 679,305 - +0.8 679,305 - +1.7 679,326 + -0.4 679,326 + +0.1 679,326 + -0.1 679,334 - +0.1 679,334 - +0.9 679,334 - +0.5 679,345 - -0.3 679,356 - -0.4 679,397 + -0.2 679,404 - +0.3 679,419 + Shew_0600 0.14 +0.0 679,445 - Shew_0600 0.23 +0.1 679,447 - Shew_0600 0.23 +1.1 679,543 - Shew_0600 0.54 +0.4 679,551 - Shew_0600 0.56 +0.6 679,553 + Shew_0600 0.57 +0.7 679,553 + Shew_0600 0.57 +0.2 679,556 - Shew_0600 0.58 +0.4 679,561 - Shew_0600 0.59 +0.6 679,561 - Shew_0600 0.59 +0.3 679,561 - Shew_0600 0.59 +1.7 679,561 - Shew_0600 0.59 +0.0 679,561 - Shew_0600 0.59 +0.7 679,580 + Shew_0600 0.65 +0.3 679,580 + Shew_0600 0.65 +0.1 679,587 + Shew_0600 0.68 -0.2 679,587 + Shew_0600 0.68 -0.3 679,588 - Shew_0600 0.68 -0.0 679,588 - Shew_0600 0.68 +0.3 679,588 - Shew_0600 0.68 -0.3 679,588 - Shew_0600 0.68 +0.3 679,588 - Shew_0600 0.68 +0.7 679,588 - Shew_0600 0.68 +0.3 679,593 - Shew_0600 0.70 +0.0 679,597 + Shew_0600 0.71 -0.1 679,611 + Shew_0600 0.75 +0.2 679,657 + +0.6 679,702 + +0.0 679,702 + +0.0 679,710 - -0.1 679,710 - +0.1 679,710 - -0.2 679,730 - +0.6 679,730 - -0.1 679,730 - +0.8 679,730 - +0.0 679,730 - +0.3 679,737 + +0.1 679,745 - +0.3 679,745 - -0.1 679,745 - +0.4 679,745 - -1.4 679,745 - +0.7 679,746 + -0.6 679,754 - +0.0 679,754 - +0.2 679,754 - +0.2 679,754 - -0.3 679,754 - +0.2 679,758 + +1.2 679,758 + -0.2 679,758 + -0.4 679,763 + -0.3 679,766 - +0.4 679,766 - -0.1 679,803 + -0.1 679,803 + +0.3 679,811 - +0.0 679,811 - +0.5 679,811 - +0.5 679,855 + +0.0 679,907 + +0.1 679,907 + +0.1 679,915 + -0.1 679,915 - +0.6 679,915 - -0.0 679,915 - +1.5 679,915 - +0.2 679,915 - +1.1 679,915 - -0.0 679,915 - +0.0 679,915 + -0.3 679,915 - -0.2 679,923 - -0.6 679,923 - -0.6 679,930 - +1.6 679,968 + +0.3 679,983 - -0.7 680,003 - -0.2 680,060 + +0.1 680,060 + -0.6 680,060 + +0.3 680,060 + -0.0 680,060 + -0.0 680,060 + -0.8 680,066 + +0.1 680,068 - +0.6 680,068 - +0.7 680,068 - +0.3 680,068 - +0.3 680,074 + +0.3 680,075 - +0.0 680,082 - -2.5 680,084 + -0.2 680,089 - -0.5 680,116 + +0.2 680,164 + -0.7 680,164 + +0.4 680,164 + +0.1 680,164 + +0.1 680,172 - -0.0 680,172 - +1.6 680,172 + -0.0 680,174 + -0.1 680,220 + -1.8 680,220 + +0.5 680,221 + +0.5 680,223 - +0.1 680,228 - +0.4 680,234 + -0.1 680,234 + -0.0 680,234 + -0.4 680,234 + +0.0 680,234 + -0.0 680,234 + +0.3 680,234 + -0.5 680,234 + +0.2 680,242 - -1.0 680,242 - +3.6 680,242 - +0.0 680,242 - -0.0 680,242 - +0.2 680,242 - +0.3 680,242 - +1.5 680,242 - +0.0 680,244 + -0.2
Or see this region's nucleotide sequence