Strain Fitness in Shewanella loihica PV-4 around Shew_0554

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0553 and Shew_0554 are separated by 494 nucleotidesShew_0554 and Shew_0555 overlap by 1 nucleotides Shew_0553: Shew_0553 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 624,800 to 625,726 _0553 Shew_0554: Shew_0554 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 626,221 to 626,928 _0554 Shew_0555: Shew_0555 - MscS mechanosensitive ion channel (RefSeq), at 626,928 to 630,110 _0555 Position (kb) 626 627Strain fitness (log2 ratio) -1 0 1 2at 625.386 kb on - strand, within Shew_0553at 626.349 kb on - strand, within Shew_0554at 626.505 kb on + strand, within Shew_0554at 626.505 kb on + strand, within Shew_0554at 627.153 kb on + strandat 627.521 kb on + strand, within Shew_0555at 627.618 kb on - strand, within Shew_0555at 627.926 kb on + strand, within Shew_0555

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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625,386 - Shew_0553 0.63 -0.1
626,349 - Shew_0554 0.18 +2.0
626,505 + Shew_0554 0.40 -0.0
626,505 + Shew_0554 0.40 -0.1
627,153 + -0.4
627,521 + Shew_0555 0.19 -0.7
627,618 - Shew_0555 0.22 -1.4
627,926 + Shew_0555 0.31 +0.1

Or see this region's nucleotide sequence