Strain Fitness in Shewanella loihica PV-4 around Shew_0531

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0530 and Shew_0531 are separated by 62 nucleotidesShew_0531 and Shew_0532 are separated by 247 nucleotides Shew_0530: Shew_0530 - FAD dependent oxidoreductase (RefSeq), at 599,363 to 600,490 _0530 Shew_0531: Shew_0531 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 600,553 to 602,352 _0531 Shew_0532: Shew_0532 - peptidase M28 (RefSeq), at 602,600 to 603,628 _0532 Position (kb) 600 601 602 603Strain fitness (log2 ratio) -1 0 1 2 3 4at 599.562 kb on - strand, within Shew_0530at 599.566 kb on + strand, within Shew_0530at 599.819 kb on - strand, within Shew_0530at 599.993 kb on - strand, within Shew_0530at 600.012 kb on + strand, within Shew_0530at 600.678 kb on - strandat 601.070 kb on + strand, within Shew_0531at 601.078 kb on - strand, within Shew_0531at 601.294 kb on - strand, within Shew_0531at 601.999 kb on - strand, within Shew_0531at 602.191 kb on - strandat 602.362 kb on - strandat 602.363 kb on - strandat 602.879 kb on - strand, within Shew_0532at 602.879 kb on - strand, within Shew_0532at 602.982 kb on + strand, within Shew_0532at 602.982 kb on + strand, within Shew_0532at 602.990 kb on - strand, within Shew_0532at 602.990 kb on - strand, within Shew_0532at 603.018 kb on + strand, within Shew_0532at 603.112 kb on - strand, within Shew_0532

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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599,562 - Shew_0530 0.18 +0.5
599,566 + Shew_0530 0.18 -0.1
599,819 - Shew_0530 0.40 +0.0
599,993 - Shew_0530 0.56 +0.5
600,012 + Shew_0530 0.58 +0.4
600,678 - +1.9
601,070 + Shew_0531 0.29 +2.0
601,078 - Shew_0531 0.29 +0.7
601,294 - Shew_0531 0.41 +1.9
601,999 - Shew_0531 0.80 +1.6
602,191 - +2.0
602,362 - +1.6
602,363 - +3.9
602,879 - Shew_0532 0.27 -0.5
602,879 - Shew_0532 0.27 -0.6
602,982 + Shew_0532 0.37 -0.3
602,982 + Shew_0532 0.37 -0.3
602,990 - Shew_0532 0.38 +0.2
602,990 - Shew_0532 0.38 +1.3
603,018 + Shew_0532 0.41 -0.6
603,112 - Shew_0532 0.50 +0.1

Or see this region's nucleotide sequence