Strain Fitness in Shewanella loihica PV-4 around Shew_0372

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0371 and Shew_0372 are separated by 94 nucleotidesShew_0372 and Shew_0373 are separated by 21 nucleotidesShew_0373 and hslU are separated by 76 nucleotides Shew_0371: Shew_0371 - AraC family transcriptional regulator (RefSeq), at 419,234 to 420,100 _0371 Shew_0372: Shew_0372 - hypothetical protein (RefSeq), at 420,195 to 420,629 _0372 Shew_0373: Shew_0373 - hypothetical protein (RefSeq), at 420,651 to 421,046 _0373 Shew_0374: hslU - ATP-dependent protease ATP-binding subunit (RefSeq), at 421,123 to 422,448 hslU Position (kb) 420 421Strain fitness (log2 ratio) -2 -1 0 1at 419.466 kb on + strand, within Shew_0371at 419.761 kb on + strand, within Shew_0371at 419.890 kb on + strand, within Shew_0371at 420.095 kb on + strandat 420.254 kb on + strand, within Shew_0372at 420.343 kb on + strand, within Shew_0372at 420.613 kb on + strandat 420.780 kb on + strand, within Shew_0373at 420.886 kb on + strand, within Shew_0373at 420.886 kb on + strand, within Shew_0373at 421.058 kb on + strandat 421.559 kb on + strand, within hslU

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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419,466 + Shew_0371 0.27 +0.1
419,761 + Shew_0371 0.61 +0.2
419,890 + Shew_0371 0.76 -0.3
420,095 + -0.6
420,254 + Shew_0372 0.14 +1.1
420,343 + Shew_0372 0.34 +0.2
420,613 + +0.1
420,780 + Shew_0373 0.33 +0.3
420,886 + Shew_0373 0.59 -0.6
420,886 + Shew_0373 0.59 -1.3
421,058 + -1.9
421,559 + hslU Shew_0374 0.33 +0.9

Or see this region's nucleotide sequence