Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0340 and Shew_0341 are separated by 288 nucleotides Shew_0341 and Shew_0342 are separated by 50 nucleotides Shew_0342 and Shew_0343 are separated by 229 nucleotides
Shew_0340: Shew_0340 - Ppx/GppA phosphatase (RefSeq), at 385,890 to 386,822
_0340
Shew_0341: Shew_0341 - TonB-dependent receptor (RefSeq), at 387,111 to 389,840
_0341
Shew_0342: Shew_0342 - hypothetical protein (RefSeq), at 389,891 to 390,427
_0342
Shew_0343: Shew_0343 - hypothetical protein (RefSeq), at 390,657 to 391,235
_0343
Position (kb) 387
388
389
390 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 386.132 kb on + strand, within Shew_0340 at 386.207 kb on - strand, within Shew_0340 at 386.559 kb on + strand, within Shew_0340 at 387.109 kb on + strand at 387.225 kb on - strand at 387.230 kb on - strand at 387.413 kb on + strand, within Shew_0341 at 387.413 kb on + strand, within Shew_0341 at 387.473 kb on + strand, within Shew_0341 at 387.677 kb on - strand, within Shew_0341 at 388.146 kb on + strand, within Shew_0341 at 388.204 kb on + strand, within Shew_0341 at 388.204 kb on + strand, within Shew_0341 at 388.204 kb on + strand, within Shew_0341 at 388.211 kb on - strand, within Shew_0341 at 388.212 kb on - strand, within Shew_0341 at 388.212 kb on - strand, within Shew_0341 at 388.212 kb on - strand, within Shew_0341 at 388.212 kb on - strand, within Shew_0341 at 388.212 kb on - strand, within Shew_0341 at 388.212 kb on - strand, within Shew_0341 at 388.212 kb on - strand, within Shew_0341 at 388.242 kb on + strand, within Shew_0341 at 388.274 kb on - strand, within Shew_0341 at 388.317 kb on + strand, within Shew_0341 at 388.317 kb on + strand, within Shew_0341 at 388.325 kb on - strand, within Shew_0341 at 388.467 kb on + strand, within Shew_0341 at 388.494 kb on + strand, within Shew_0341 at 388.610 kb on + strand, within Shew_0341 at 388.758 kb on + strand, within Shew_0341 at 388.768 kb on + strand, within Shew_0341 at 388.773 kb on + strand, within Shew_0341 at 388.879 kb on + strand, within Shew_0341 at 388.925 kb on - strand, within Shew_0341 at 389.107 kb on + strand, within Shew_0341 at 389.158 kb on - strand, within Shew_0341 at 389.338 kb on - strand, within Shew_0341 at 389.350 kb on + strand, within Shew_0341 at 389.595 kb on + strand at 389.630 kb on - strand at 389.697 kb on - strand at 389.815 kb on - strand at 390.008 kb on - strand, within Shew_0342 at 390.049 kb on + strand, within Shew_0342 at 390.088 kb on + strand, within Shew_0342 at 390.294 kb on - strand, within Shew_0342 at 390.307 kb on + strand, within Shew_0342 at 390.388 kb on + strand at 390.396 kb on - strand at 390.564 kb on - strand at 390.634 kb on - strand at 390.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 386,132 + Shew_0340 0.26 -0.2 386,207 - Shew_0340 0.34 +0.2 386,559 + Shew_0340 0.72 +0.6 387,109 + -0.1 387,225 - +0.1 387,230 - +0.4 387,413 + Shew_0341 0.11 +0.4 387,413 + Shew_0341 0.11 -0.3 387,473 + Shew_0341 0.13 +0.6 387,677 - Shew_0341 0.21 +0.3 388,146 + Shew_0341 0.38 +0.2 388,204 + Shew_0341 0.40 +0.2 388,204 + Shew_0341 0.40 +0.1 388,204 + Shew_0341 0.40 +0.1 388,211 - Shew_0341 0.40 +0.0 388,212 - Shew_0341 0.40 +0.2 388,212 - Shew_0341 0.40 +0.3 388,212 - Shew_0341 0.40 -1.0 388,212 - Shew_0341 0.40 +0.3 388,212 - Shew_0341 0.40 +0.5 388,212 - Shew_0341 0.40 -0.1 388,212 - Shew_0341 0.40 +0.2 388,242 + Shew_0341 0.41 +4.0 388,274 - Shew_0341 0.43 +0.3 388,317 + Shew_0341 0.44 +1.1 388,317 + Shew_0341 0.44 -0.1 388,325 - Shew_0341 0.44 -0.2 388,467 + Shew_0341 0.50 -0.1 388,494 + Shew_0341 0.51 +0.8 388,610 + Shew_0341 0.55 -0.4 388,758 + Shew_0341 0.60 +0.3 388,768 + Shew_0341 0.61 +0.5 388,773 + Shew_0341 0.61 +0.6 388,879 + Shew_0341 0.65 +0.0 388,925 - Shew_0341 0.66 +0.3 389,107 + Shew_0341 0.73 -0.5 389,158 - Shew_0341 0.75 -0.8 389,338 - Shew_0341 0.82 +0.4 389,350 + Shew_0341 0.82 -0.0 389,595 + +0.1 389,630 - -0.2 389,697 - +0.3 389,815 - +0.3 390,008 - Shew_0342 0.22 +1.0 390,049 + Shew_0342 0.29 -0.4 390,088 + Shew_0342 0.37 +1.6 390,294 - Shew_0342 0.75 +0.8 390,307 + Shew_0342 0.77 +0.6 390,388 + +1.2 390,396 - -0.4 390,564 - -0.5 390,634 - +0.4 390,711 - +0.1
Or see this region's nucleotide sequence