Strain Fitness in Shewanella loihica PV-4 around Shew_0140

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0139 and Shew_0140 are separated by 68 nucleotidesShew_0140 and Shew_R0001 are separated by 631 nucleotides Shew_0139: Shew_0139 - glutamate racemase (RefSeq), at 149,128 to 149,928 _0139 Shew_0140: Shew_0140 - RNP-1-like RNA-binding protein (RefSeq), at 149,997 to 150,455 _0140 Shew_R0001: Shew_R0001 - 16S ribosomal RNA (RefSeq), at 151,087 to 152,641 _R0001 Position (kb) 149 150 151Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 149.887 kb on + strandat 149.887 kb on + strandat 150.053 kb on + strand, within Shew_0140at 150.053 kb on + strand, within Shew_0140at 150.061 kb on - strand, within Shew_0140at 150.135 kb on + strand, within Shew_0140at 150.201 kb on - strand, within Shew_0140at 150.238 kb on + strand, within Shew_0140at 150.238 kb on + strand, within Shew_0140at 150.238 kb on + strand, within Shew_0140at 150.238 kb on + strand, within Shew_0140at 150.238 kb on + strand, within Shew_0140at 150.238 kb on + strand, within Shew_0140at 150.246 kb on - strand, within Shew_0140at 150.278 kb on + strand, within Shew_0140at 150.280 kb on + strand, within Shew_0140at 150.288 kb on - strand, within Shew_0140at 150.318 kb on - strand, within Shew_0140at 150.385 kb on + strand, within Shew_0140at 150.393 kb on - strand, within Shew_0140at 150.393 kb on - strand, within Shew_0140

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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149,887 + -0.3
149,887 + -0.1
150,053 + Shew_0140 0.12 -0.6
150,053 + Shew_0140 0.12 -0.3
150,061 - Shew_0140 0.14 -0.4
150,135 + Shew_0140 0.30 -1.0
150,201 - Shew_0140 0.44 +3.8
150,238 + Shew_0140 0.53 -1.7
150,238 + Shew_0140 0.53 -1.7
150,238 + Shew_0140 0.53 -0.5
150,238 + Shew_0140 0.53 -1.4
150,238 + Shew_0140 0.53 -2.5
150,238 + Shew_0140 0.53 -1.2
150,246 - Shew_0140 0.54 -0.9
150,278 + Shew_0140 0.61 -0.8
150,280 + Shew_0140 0.62 -0.4
150,288 - Shew_0140 0.63 -0.5
150,318 - Shew_0140 0.70 -0.1
150,385 + Shew_0140 0.85 -3.1
150,393 - Shew_0140 0.86 -0.8
150,393 - Shew_0140 0.86 -1.0

Or see this region's nucleotide sequence