Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4148

Experiment: m.b. perchlorate 50 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_4147 and Dshi_4148 overlap by 8 nucleotidesDshi_4148 and Dshi_4149 are separated by 265 nucleotidesDshi_4149 and Dshi_4150 overlap by 4 nucleotides Dshi_4147: Dshi_4147 - glycosyl transferase family 2 (RefSeq), at 79,830 to 80,822 _4147 Dshi_4148: Dshi_4148 - ABC-2 type transporter (RefSeq), at 80,815 to 81,660 _4148 Dshi_4149: Dshi_4149 - transferase hexapeptide repeat containing protein (RefSeq), at 81,926 to 82,657 _4149 Dshi_4150: Dshi_4150 - hypothetical protein (RefSeq), at 82,654 to 83,457 _4150 Position (kb) 80 81 82Strain fitness (log2 ratio) -1 0 1 2 3at 79.816 kb on - strandat 79.870 kb on - strandat 79.911 kb on - strandat 80.070 kb on + strand, within Dshi_4147at 80.108 kb on - strand, within Dshi_4147at 80.216 kb on - strand, within Dshi_4147at 80.297 kb on - strand, within Dshi_4147at 80.676 kb on - strand, within Dshi_4147at 80.780 kb on + strandat 80.798 kb on + strandat 80.908 kb on + strand, within Dshi_4148at 80.916 kb on - strand, within Dshi_4148at 80.916 kb on - strand, within Dshi_4148at 80.969 kb on - strand, within Dshi_4148at 81.116 kb on - strand, within Dshi_4148at 81.174 kb on + strand, within Dshi_4148at 81.182 kb on - strand, within Dshi_4148at 81.190 kb on - strand, within Dshi_4148at 81.243 kb on + strand, within Dshi_4148at 81.322 kb on + strand, within Dshi_4148at 81.477 kb on + strand, within Dshi_4148at 81.623 kb on - strandat 81.641 kb on + strandat 81.641 kb on + strandat 81.709 kb on - strandat 81.740 kb on - strandat 81.819 kb on - strandat 81.949 kb on - strandat 81.982 kb on + strandat 82.021 kb on - strand, within Dshi_4149at 82.034 kb on + strand, within Dshi_4149at 82.099 kb on + strand, within Dshi_4149at 82.108 kb on - strand, within Dshi_4149at 82.164 kb on - strand, within Dshi_4149at 82.193 kb on + strand, within Dshi_4149at 82.201 kb on - strand, within Dshi_4149at 82.306 kb on - strand, within Dshi_4149at 82.308 kb on - strand, within Dshi_4149at 82.315 kb on + strand, within Dshi_4149at 82.417 kb on + strand, within Dshi_4149at 82.520 kb on + strand, within Dshi_4149at 82.574 kb on + strand, within Dshi_4149at 82.582 kb on - strand, within Dshi_4149at 82.582 kb on - strand, within Dshi_4149

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
remove
79,816 - -0.5
79,870 - +0.5
79,911 - +1.4
80,070 + Dshi_4147 0.24 +2.0
80,108 - Dshi_4147 0.28 +3.3
80,216 - Dshi_4147 0.39 +2.9
80,297 - Dshi_4147 0.47 +2.7
80,676 - Dshi_4147 0.85 +1.5
80,780 + +0.3
80,798 + +2.3
80,908 + Dshi_4148 0.11 +1.5
80,916 - Dshi_4148 0.12 +2.4
80,916 - Dshi_4148 0.12 +1.7
80,969 - Dshi_4148 0.18 +1.7
81,116 - Dshi_4148 0.36 +2.6
81,174 + Dshi_4148 0.42 +2.5
81,182 - Dshi_4148 0.43 +2.1
81,190 - Dshi_4148 0.44 +3.1
81,243 + Dshi_4148 0.51 +1.6
81,322 + Dshi_4148 0.60 -1.5
81,477 + Dshi_4148 0.78 +0.2
81,623 - +1.7
81,641 + -0.5
81,641 + -0.7
81,709 - +0.3
81,740 - +0.1
81,819 - +0.6
81,949 - +0.8
81,982 + +2.2
82,021 - Dshi_4149 0.13 +1.8
82,034 + Dshi_4149 0.15 +1.6
82,099 + Dshi_4149 0.24 +2.0
82,108 - Dshi_4149 0.25 +2.1
82,164 - Dshi_4149 0.33 +1.1
82,193 + Dshi_4149 0.36 +1.4
82,201 - Dshi_4149 0.38 +0.9
82,306 - Dshi_4149 0.52 +1.7
82,308 - Dshi_4149 0.52 +2.0
82,315 + Dshi_4149 0.53 +1.5
82,417 + Dshi_4149 0.67 -0.9
82,520 + Dshi_4149 0.81 +0.8
82,574 + Dshi_4149 0.89 +2.2
82,582 - Dshi_4149 0.90 +1.8
82,582 - Dshi_4149 0.90 +2.1

Or see this region's nucleotide sequence