Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3976 and Dshi_3977 overlap by 4 nucleotides Dshi_3977 and Dshi_3978 overlap by 11 nucleotides
Dshi_3976: Dshi_3976 - CagE TrbE VirB component of type IV transporter system (RefSeq), at 34,700 to 37,063
_3976
Dshi_3977: Dshi_3977 - hypothetical protein (RefSeq), at 37,060 to 37,227
_3977
Dshi_3978: Dshi_3978 - Lytic transglycosylase catalytic (RefSeq), at 37,217 to 38,371
_3978
Position (kb) 37
38 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 36.085 kb on + strand, within Dshi_3976 at 36.089 kb on - strand, within Dshi_3976 at 36.131 kb on + strand, within Dshi_3976 at 36.188 kb on - strand, within Dshi_3976 at 36.274 kb on - strand, within Dshi_3976 at 36.281 kb on + strand, within Dshi_3976 at 36.323 kb on - strand, within Dshi_3976 at 36.345 kb on + strand, within Dshi_3976 at 36.438 kb on + strand, within Dshi_3976 at 36.477 kb on + strand, within Dshi_3976 at 36.524 kb on - strand, within Dshi_3976 at 36.712 kb on + strand, within Dshi_3976 at 36.778 kb on + strand, within Dshi_3976 at 37.004 kb on + strand at 37.020 kb on + strand at 37.045 kb on + strand at 37.118 kb on + strand, within Dshi_3977 at 37.209 kb on + strand, within Dshi_3977 at 37.229 kb on - strand at 37.239 kb on - strand at 37.273 kb on + strand at 37.447 kb on - strand, within Dshi_3978 at 37.471 kb on - strand, within Dshi_3978 at 37.663 kb on + strand, within Dshi_3978 at 37.668 kb on + strand, within Dshi_3978 at 37.697 kb on + strand, within Dshi_3978 at 37.737 kb on + strand, within Dshi_3978 at 37.750 kb on - strand, within Dshi_3978 at 37.967 kb on + strand, within Dshi_3978 at 37.989 kb on + strand, within Dshi_3978 at 38.052 kb on + strand, within Dshi_3978 at 38.085 kb on - strand, within Dshi_3978 at 38.088 kb on - strand, within Dshi_3978 at 38.098 kb on - strand, within Dshi_3978 at 38.217 kb on + strand, within Dshi_3978 at 38.222 kb on - strand, within Dshi_3978 at 38.222 kb on - strand, within Dshi_3978 at 38.227 kb on + strand, within Dshi_3978
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 36,085 + Dshi_3976 0.59 -0.5 36,089 - Dshi_3976 0.59 -0.3 36,131 + Dshi_3976 0.61 -0.0 36,188 - Dshi_3976 0.63 +2.1 36,274 - Dshi_3976 0.67 +0.7 36,281 + Dshi_3976 0.67 -0.5 36,323 - Dshi_3976 0.69 -0.1 36,345 + Dshi_3976 0.70 -2.0 36,438 + Dshi_3976 0.74 -0.0 36,477 + Dshi_3976 0.75 -0.0 36,524 - Dshi_3976 0.77 +0.1 36,712 + Dshi_3976 0.85 -0.3 36,778 + Dshi_3976 0.88 -0.6 37,004 + -0.2 37,020 + +0.2 37,045 + +0.7 37,118 + Dshi_3977 0.35 +2.5 37,209 + Dshi_3977 0.89 +0.7 37,229 - +1.4 37,239 - +0.6 37,273 + +0.5 37,447 - Dshi_3978 0.20 -0.0 37,471 - Dshi_3978 0.22 +1.0 37,663 + Dshi_3978 0.39 +1.1 37,668 + Dshi_3978 0.39 +0.4 37,697 + Dshi_3978 0.42 +0.4 37,737 + Dshi_3978 0.45 +0.3 37,750 - Dshi_3978 0.46 -0.2 37,967 + Dshi_3978 0.65 -0.9 37,989 + Dshi_3978 0.67 +0.7 38,052 + Dshi_3978 0.72 +1.8 38,085 - Dshi_3978 0.75 +2.9 38,088 - Dshi_3978 0.75 -0.0 38,098 - Dshi_3978 0.76 -0.0 38,217 + Dshi_3978 0.87 +0.3 38,222 - Dshi_3978 0.87 +0.3 38,222 - Dshi_3978 0.87 +0.3 38,227 + Dshi_3978 0.87 -1.5
Or see this region's nucleotide sequence