Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2685

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2683 and Dshi_2684 are separated by 81 nucleotidesDshi_2684 and Dshi_2685 are separated by 394 nucleotidesDshi_2685 and Dshi_2686 are separated by 302 nucleotidesDshi_2686 and Dshi_2687 are separated by 226 nucleotides Dshi_2683: Dshi_2683 - Aldose 1-epimerase (RefSeq), at 2,843,824 to 2,844,828 _2683 Dshi_2684: Dshi_2684 - Hydroxyisourate hydrolase (RefSeq), at 2,844,910 to 2,845,275 _2684 Dshi_2685: Dshi_2685 - Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (RefSeq), at 2,845,670 to 2,846,659 _2685 Dshi_2686: Dshi_2686 - UspA domain protein (RefSeq), at 2,846,962 to 2,847,378 _2686 Dshi_2687: Dshi_2687 - pseudoazurin (RefSeq), at 2,847,605 to 2,848,090 _2687 Position (kb) 2845 2846 2847Strain fitness (log2 ratio) -2 -1 0 1 2at 2844.786 kb on - strandat 2844.882 kb on + strandat 2844.901 kb on + strandat 2845.262 kb on - strandat 2845.339 kb on - strandat 2845.555 kb on - strandat 2845.586 kb on - strandat 2845.666 kb on - strandat 2845.808 kb on - strand, within Dshi_2685at 2845.818 kb on - strand, within Dshi_2685at 2845.827 kb on - strand, within Dshi_2685at 2845.832 kb on - strand, within Dshi_2685at 2845.856 kb on - strand, within Dshi_2685at 2845.982 kb on - strand, within Dshi_2685at 2846.097 kb on + strand, within Dshi_2685at 2846.128 kb on + strand, within Dshi_2685at 2846.222 kb on + strand, within Dshi_2685at 2846.245 kb on - strand, within Dshi_2685at 2846.294 kb on + strand, within Dshi_2685at 2846.567 kb on + strandat 2846.580 kb on - strandat 2846.957 kb on + strandat 2846.964 kb on - strandat 2846.989 kb on + strandat 2847.050 kb on - strand, within Dshi_2686at 2847.056 kb on + strand, within Dshi_2686at 2847.100 kb on + strand, within Dshi_2686at 2847.158 kb on + strand, within Dshi_2686at 2847.171 kb on - strand, within Dshi_2686at 2847.202 kb on - strand, within Dshi_2686at 2847.240 kb on + strand, within Dshi_2686at 2847.240 kb on + strand, within Dshi_2686at 2847.647 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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2,844,786 - +0.2
2,844,882 + -0.3
2,844,901 + -0.1
2,845,262 - -0.3
2,845,339 - -0.3
2,845,555 - -0.8
2,845,586 - -0.3
2,845,666 - -0.9
2,845,808 - Dshi_2685 0.14 +0.2
2,845,818 - Dshi_2685 0.15 -0.1
2,845,827 - Dshi_2685 0.16 -0.4
2,845,832 - Dshi_2685 0.16 +0.8
2,845,856 - Dshi_2685 0.19 -2.3
2,845,982 - Dshi_2685 0.32 +0.5
2,846,097 + Dshi_2685 0.43 -0.8
2,846,128 + Dshi_2685 0.46 -0.7
2,846,222 + Dshi_2685 0.56 -1.2
2,846,245 - Dshi_2685 0.58 -0.4
2,846,294 + Dshi_2685 0.63 +0.1
2,846,567 + -0.0
2,846,580 - -0.6
2,846,957 + +1.4
2,846,964 - -0.5
2,846,989 + +0.1
2,847,050 - Dshi_2686 0.21 +0.5
2,847,056 + Dshi_2686 0.23 +0.4
2,847,100 + Dshi_2686 0.33 -0.6
2,847,158 + Dshi_2686 0.47 +2.3
2,847,171 - Dshi_2686 0.50 +0.1
2,847,202 - Dshi_2686 0.58 -0.0
2,847,240 + Dshi_2686 0.67 -1.7
2,847,240 + Dshi_2686 0.67 -0.5
2,847,647 - +0.0

Or see this region's nucleotide sequence