Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2492

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2491 and Dshi_2492 are separated by 12 nucleotidesDshi_2492 and Dshi_2493 overlap by 11 nucleotidesDshi_2493 and Dshi_2494 are separated by 1 nucleotides Dshi_2491: Dshi_2491 - succinyl-CoA synthetase, beta subunit (RefSeq), at 2,647,390 to 2,648,568 _2491 Dshi_2492: Dshi_2492 - succinyl-CoA synthetase, alpha subunit (RefSeq), at 2,648,581 to 2,649,480 _2492 Dshi_2493: Dshi_2493 - hypothetical protein (RefSeq), at 2,649,470 to 2,650,336 _2493 Dshi_2494: Dshi_2494 - acyl-CoA transferase/carnitine dehydratase-like protein (RefSeq), at 2,650,338 to 2,651,579 _2494 Position (kb) 2648 2649 2650Strain fitness (log2 ratio) -2 -1 0 1at 2647.617 kb on + strand, within Dshi_2491at 2647.625 kb on + strand, within Dshi_2491at 2647.674 kb on + strand, within Dshi_2491at 2647.674 kb on + strand, within Dshi_2491at 2647.682 kb on - strand, within Dshi_2491at 2647.749 kb on + strand, within Dshi_2491at 2647.777 kb on + strand, within Dshi_2491at 2647.819 kb on - strand, within Dshi_2491at 2647.831 kb on + strand, within Dshi_2491at 2647.831 kb on + strand, within Dshi_2491at 2647.839 kb on - strand, within Dshi_2491at 2647.839 kb on - strand, within Dshi_2491at 2647.880 kb on + strand, within Dshi_2491at 2647.888 kb on - strand, within Dshi_2491at 2647.921 kb on - strand, within Dshi_2491at 2648.012 kb on + strand, within Dshi_2491at 2648.080 kb on + strand, within Dshi_2491at 2648.107 kb on - strand, within Dshi_2491at 2648.147 kb on - strand, within Dshi_2491at 2648.188 kb on + strand, within Dshi_2491at 2648.270 kb on + strand, within Dshi_2491at 2648.270 kb on + strandat 2648.293 kb on - strand, within Dshi_2491at 2648.391 kb on + strand, within Dshi_2491at 2648.391 kb on + strand, within Dshi_2491at 2648.578 kb on + strandat 2648.626 kb on - strandat 2648.701 kb on - strand, within Dshi_2492at 2648.711 kb on - strand, within Dshi_2492at 2648.722 kb on + strand, within Dshi_2492at 2648.730 kb on - strand, within Dshi_2492at 2648.766 kb on + strand, within Dshi_2492at 2648.789 kb on - strand, within Dshi_2492at 2648.862 kb on + strand, within Dshi_2492at 2648.897 kb on - strand, within Dshi_2492at 2648.952 kb on - strand, within Dshi_2492at 2648.991 kb on + strand, within Dshi_2492at 2649.015 kb on + strand, within Dshi_2492at 2649.079 kb on + strand, within Dshi_2492at 2649.174 kb on + strand, within Dshi_2492at 2649.200 kb on - strand, within Dshi_2492at 2649.284 kb on - strand, within Dshi_2492at 2649.309 kb on + strand, within Dshi_2492at 2649.346 kb on + strand, within Dshi_2492at 2649.395 kb on - strandat 2649.427 kb on + strandat 2649.440 kb on - strandat 2649.523 kb on + strandat 2649.531 kb on - strandat 2649.603 kb on + strand, within Dshi_2493at 2649.722 kb on + strand, within Dshi_2493at 2649.729 kb on + strand, within Dshi_2493at 2649.734 kb on - strand, within Dshi_2493at 2649.739 kb on + strand, within Dshi_2493at 2649.750 kb on + strand, within Dshi_2493at 2649.781 kb on - strand, within Dshi_2493at 2649.842 kb on + strand, within Dshi_2493at 2649.850 kb on - strand, within Dshi_2493at 2649.896 kb on - strand, within Dshi_2493at 2649.941 kb on + strand, within Dshi_2493at 2649.967 kb on + strand, within Dshi_2493at 2649.974 kb on + strand, within Dshi_2493at 2649.975 kb on - strand, within Dshi_2493at 2650.017 kb on - strand, within Dshi_2493at 2650.068 kb on + strand, within Dshi_2493at 2650.149 kb on + strand, within Dshi_2493at 2650.157 kb on - strand, within Dshi_2493at 2650.179 kb on + strand, within Dshi_2493at 2650.224 kb on + strandat 2650.307 kb on - strandat 2650.375 kb on + strandat 2650.392 kb on + strandat 2650.421 kb on + strandat 2650.431 kb on + strandat 2650.451 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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2,647,617 + Dshi_2491 0.19 -0.7
2,647,625 + Dshi_2491 0.20 -0.9
2,647,674 + Dshi_2491 0.24 +0.3
2,647,674 + Dshi_2491 0.24 +0.2
2,647,682 - Dshi_2491 0.25 +0.3
2,647,749 + Dshi_2491 0.30 +0.2
2,647,777 + Dshi_2491 0.33 +0.2
2,647,819 - Dshi_2491 0.36 +0.1
2,647,831 + Dshi_2491 0.37 +0.3
2,647,831 + Dshi_2491 0.37 +0.2
2,647,839 - Dshi_2491 0.38 +1.1
2,647,839 - Dshi_2491 0.38 +0.1
2,647,880 + Dshi_2491 0.42 -0.7
2,647,888 - Dshi_2491 0.42 +1.5
2,647,921 - Dshi_2491 0.45 -1.1
2,648,012 + Dshi_2491 0.53 -0.4
2,648,080 + Dshi_2491 0.59 -0.9
2,648,107 - Dshi_2491 0.61 +0.5
2,648,147 - Dshi_2491 0.64 +0.9
2,648,188 + Dshi_2491 0.68 -2.1
2,648,270 + Dshi_2491 0.75 +0.3
2,648,270 + +0.1
2,648,293 - Dshi_2491 0.77 +0.6
2,648,391 + Dshi_2491 0.85 -0.6
2,648,391 + Dshi_2491 0.85 +0.5
2,648,578 + +0.6
2,648,626 - -1.0
2,648,701 - Dshi_2492 0.13 +1.3
2,648,711 - Dshi_2492 0.14 -0.5
2,648,722 + Dshi_2492 0.16 -0.9
2,648,730 - Dshi_2492 0.17 -0.3
2,648,766 + Dshi_2492 0.21 +0.1
2,648,789 - Dshi_2492 0.23 -0.0
2,648,862 + Dshi_2492 0.31 +0.7
2,648,897 - Dshi_2492 0.35 -0.9
2,648,952 - Dshi_2492 0.41 +0.6
2,648,991 + Dshi_2492 0.46 +1.5
2,649,015 + Dshi_2492 0.48 +0.0
2,649,079 + Dshi_2492 0.55 +0.0
2,649,174 + Dshi_2492 0.66 +1.3
2,649,200 - Dshi_2492 0.69 -0.6
2,649,284 - Dshi_2492 0.78 -0.6
2,649,309 + Dshi_2492 0.81 +0.4
2,649,346 + Dshi_2492 0.85 +0.7
2,649,395 - +0.9
2,649,427 + +0.6
2,649,440 - -1.1
2,649,523 + -0.1
2,649,531 - -0.0
2,649,603 + Dshi_2493 0.15 -0.6
2,649,722 + Dshi_2493 0.29 +0.9
2,649,729 + Dshi_2493 0.30 -0.5
2,649,734 - Dshi_2493 0.30 -0.6
2,649,739 + Dshi_2493 0.31 -0.0
2,649,750 + Dshi_2493 0.32 +0.5
2,649,781 - Dshi_2493 0.36 -0.0
2,649,842 + Dshi_2493 0.43 -0.2
2,649,850 - Dshi_2493 0.44 +0.1
2,649,896 - Dshi_2493 0.49 -1.1
2,649,941 + Dshi_2493 0.54 -1.6
2,649,967 + Dshi_2493 0.57 +0.0
2,649,974 + Dshi_2493 0.58 +0.1
2,649,975 - Dshi_2493 0.58 +0.3
2,650,017 - Dshi_2493 0.63 +1.0
2,650,068 + Dshi_2493 0.69 +1.5
2,650,149 + Dshi_2493 0.78 -0.5
2,650,157 - Dshi_2493 0.79 -0.0
2,650,179 + Dshi_2493 0.82 +0.8
2,650,224 + -0.9
2,650,307 - +0.1
2,650,375 + +0.2
2,650,392 + -1.3
2,650,421 + -1.3
2,650,431 + +0.2
2,650,451 + +1.5

Or see this region's nucleotide sequence