Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1986

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1985 and Dshi_1986 are separated by 431 nucleotidesDshi_1986 and Dshi_1987 are separated by 356 nucleotides Dshi_1985: Dshi_1985 - aldo/keto reductase (RefSeq), at 2,097,774 to 2,099,216 _1985 Dshi_1986: Dshi_1986 - isocitrate dehydrogenase, NADP-dependent (RefSeq), at 2,099,648 to 2,101,816 _1986 Dshi_1987: Dshi_1987 - hypothetical protein (RefSeq), at 2,102,173 to 2,102,721 _1987 Position (kb) 2099 2100 2101 2102Strain fitness (log2 ratio) -1 0 1at 2098.691 kb on + strand, within Dshi_1985at 2098.827 kb on - strand, within Dshi_1985at 2098.827 kb on - strand, within Dshi_1985at 2099.000 kb on + strand, within Dshi_1985at 2099.065 kb on - strand, within Dshi_1985at 2099.248 kb on + strandat 2099.256 kb on - strandat 2099.277 kb on - strandat 2099.303 kb on + strandat 2099.405 kb on - strandat 2099.434 kb on + strandat 2101.909 kb on - strandat 2102.173 kb on - strandat 2102.258 kb on + strand, within Dshi_1987at 2102.258 kb on + strand, within Dshi_1987at 2102.266 kb on - strand, within Dshi_1987at 2102.278 kb on + strand, within Dshi_1987at 2102.286 kb on - strand, within Dshi_1987at 2102.286 kb on - strand, within Dshi_1987at 2102.466 kb on - strand, within Dshi_1987at 2102.652 kb on + strand, within Dshi_1987

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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2,098,691 + Dshi_1985 0.64 -0.0
2,098,827 - Dshi_1985 0.73 +0.4
2,098,827 - Dshi_1985 0.73 +0.5
2,099,000 + Dshi_1985 0.85 -0.3
2,099,065 - Dshi_1985 0.89 +0.4
2,099,248 + -1.1
2,099,256 - +0.0
2,099,277 - -0.0
2,099,303 + +0.3
2,099,405 - -1.1
2,099,434 + +0.1
2,101,909 - -0.3
2,102,173 - +0.0
2,102,258 + Dshi_1987 0.15 +0.2
2,102,258 + Dshi_1987 0.15 +0.1
2,102,266 - Dshi_1987 0.17 -1.0
2,102,278 + Dshi_1987 0.19 +0.5
2,102,286 - Dshi_1987 0.21 +1.0
2,102,286 - Dshi_1987 0.21 +0.2
2,102,466 - Dshi_1987 0.53 -0.6
2,102,652 + Dshi_1987 0.87 -0.1

Or see this region's nucleotide sequence