Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1925

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1924 and Dshi_1925 are separated by 29 nucleotidesDshi_1925 and Dshi_1926 are separated by 87 nucleotides Dshi_1924: Dshi_1924 - TRAP transporter solute receptor, TAXI family (RefSeq), at 2,009,151 to 2,010,203 _1924 Dshi_1925: Dshi_1925 - AAA ATPase (RefSeq), at 2,010,233 to 2,012,482 _1925 Dshi_1926: Dshi_1926 - primosomal protein N' (RefSeq), at 2,012,570 to 2,014,753 _1926 Position (kb) 2010 2011 2012 2013Strain fitness (log2 ratio) -1 0 1at 2009.275 kb on + strand, within Dshi_1924at 2009.337 kb on - strand, within Dshi_1924at 2009.409 kb on + strand, within Dshi_1924at 2009.551 kb on - strand, within Dshi_1924at 2009.579 kb on - strand, within Dshi_1924at 2009.676 kb on - strand, within Dshi_1924at 2009.681 kb on - strand, within Dshi_1924at 2009.725 kb on - strand, within Dshi_1924at 2009.731 kb on - strand, within Dshi_1924at 2009.861 kb on + strand, within Dshi_1924at 2009.893 kb on - strand, within Dshi_1924at 2009.897 kb on + strand, within Dshi_1924at 2009.939 kb on - strand, within Dshi_1924at 2010.058 kb on + strand, within Dshi_1924at 2010.066 kb on + strand, within Dshi_1924at 2010.107 kb on + strandat 2010.118 kb on + strandat 2010.132 kb on + strandat 2010.513 kb on + strand, within Dshi_1925at 2010.876 kb on + strand, within Dshi_1925at 2010.876 kb on + strand, within Dshi_1925at 2010.945 kb on + strand, within Dshi_1925at 2010.945 kb on + strand, within Dshi_1925at 2011.190 kb on + strand, within Dshi_1925at 2011.239 kb on + strand, within Dshi_1925at 2011.249 kb on + strand, within Dshi_1925at 2011.257 kb on - strand, within Dshi_1925at 2011.267 kb on - strand, within Dshi_1925at 2011.372 kb on - strand, within Dshi_1925at 2011.373 kb on - strand, within Dshi_1925at 2011.437 kb on + strand, within Dshi_1925at 2011.806 kb on - strand, within Dshi_1925at 2011.848 kb on - strand, within Dshi_1925at 2011.888 kb on - strand, within Dshi_1925at 2011.995 kb on + strand, within Dshi_1925at 2012.086 kb on - strand, within Dshi_1925at 2012.232 kb on + strand, within Dshi_1925at 2012.321 kb on - strandat 2012.321 kb on - strandat 2012.380 kb on - strandat 2012.470 kb on - strandat 2012.509 kb on - strandat 2012.548 kb on - strandat 2012.550 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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2,009,275 + Dshi_1924 0.12 -0.5
2,009,337 - Dshi_1924 0.18 -0.4
2,009,409 + Dshi_1924 0.25 -0.5
2,009,551 - Dshi_1924 0.38 -0.2
2,009,579 - Dshi_1924 0.41 -0.2
2,009,676 - Dshi_1924 0.50 -0.5
2,009,681 - Dshi_1924 0.50 +1.5
2,009,725 - Dshi_1924 0.55 +0.2
2,009,731 - Dshi_1924 0.55 +0.4
2,009,861 + Dshi_1924 0.67 -0.2
2,009,893 - Dshi_1924 0.70 +0.3
2,009,897 + Dshi_1924 0.71 -0.4
2,009,939 - Dshi_1924 0.75 -0.1
2,010,058 + Dshi_1924 0.86 +0.3
2,010,066 + Dshi_1924 0.87 +1.2
2,010,107 + -0.6
2,010,118 + +0.8
2,010,132 + +0.5
2,010,513 + Dshi_1925 0.12 +0.2
2,010,876 + Dshi_1925 0.29 -0.3
2,010,876 + Dshi_1925 0.29 +0.1
2,010,945 + Dshi_1925 0.32 -0.3
2,010,945 + Dshi_1925 0.32 -1.6
2,011,190 + Dshi_1925 0.43 +0.7
2,011,239 + Dshi_1925 0.45 -0.1
2,011,249 + Dshi_1925 0.45 +0.3
2,011,257 - Dshi_1925 0.46 +0.8
2,011,267 - Dshi_1925 0.46 +1.5
2,011,372 - Dshi_1925 0.51 +0.2
2,011,373 - Dshi_1925 0.51 +0.3
2,011,437 + Dshi_1925 0.54 +0.1
2,011,806 - Dshi_1925 0.70 +0.1
2,011,848 - Dshi_1925 0.72 +0.2
2,011,888 - Dshi_1925 0.74 +0.1
2,011,995 + Dshi_1925 0.78 +0.3
2,012,086 - Dshi_1925 0.82 +0.1
2,012,232 + Dshi_1925 0.89 +0.4
2,012,321 - -0.5
2,012,321 - -0.3
2,012,380 - +0.4
2,012,470 - -0.3
2,012,509 - +0.4
2,012,548 - -0.3
2,012,550 - +0.4

Or see this region's nucleotide sequence