Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1742

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1740 and Dshi_1741 are separated by 35 nucleotidesDshi_1741 and Dshi_1742 are separated by 95 nucleotidesDshi_1742 and Dshi_1743 are separated by 3 nucleotidesDshi_1743 and Dshi_1744 are separated by 331 nucleotides Dshi_1740: Dshi_1740 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 1,807,000 to 1,808,001 _1740 Dshi_1741: Dshi_1741 - hypothetical protein (RefSeq), at 1,808,037 to 1,808,192 _1741 Dshi_1742: Dshi_1742 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 1,808,288 to 1,809,310 _1742 Dshi_1743: Dshi_1743 - GCN5-related N-acetyltransferase (RefSeq), at 1,809,314 to 1,809,916 _1743 Dshi_1744: Dshi_1744 - pantetheine-phosphate adenylyltransferase (RefSeq), at 1,810,248 to 1,810,763 _1744 Position (kb) 1808 1809 1810Strain fitness (log2 ratio) -1 0 1at 1807.576 kb on + strand, within Dshi_1740at 1807.595 kb on - strand, within Dshi_1740at 1807.697 kb on + strand, within Dshi_1740at 1807.731 kb on - strand, within Dshi_1740at 1807.818 kb on - strand, within Dshi_1740at 1807.818 kb on - strand, within Dshi_1740at 1807.818 kb on - strand, within Dshi_1740at 1807.913 kb on - strandat 1808.109 kb on + strand, within Dshi_1741at 1809.540 kb on - strand, within Dshi_1743at 1809.543 kb on + strand, within Dshi_1743at 1809.622 kb on - strand, within Dshi_1743at 1809.800 kb on - strand, within Dshi_1743at 1809.948 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,807,576 + Dshi_1740 0.57 +0.3
1,807,595 - Dshi_1740 0.59 -0.1
1,807,697 + Dshi_1740 0.70 -0.1
1,807,731 - Dshi_1740 0.73 +1.1
1,807,818 - Dshi_1740 0.82 -0.8
1,807,818 - Dshi_1740 0.82 +0.1
1,807,818 - Dshi_1740 0.82 -0.4
1,807,913 - +0.5
1,808,109 + Dshi_1741 0.46 -0.5
1,809,540 - Dshi_1743 0.37 -0.7
1,809,543 + Dshi_1743 0.38 +0.6
1,809,622 - Dshi_1743 0.51 +0.8
1,809,800 - Dshi_1743 0.81 +0.3
1,809,948 + -0.1

Or see this region's nucleotide sequence