Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1684

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1682 and Dshi_1683 are separated by 24 nucleotidesDshi_1683 and Dshi_1684 are separated by 11 nucleotidesDshi_1684 and Dshi_1685 are separated by 242 nucleotides Dshi_1682: Dshi_1682 - Glucose-6-phosphate isomerase (RefSeq), at 1,750,801 to 1,752,405 _1682 Dshi_1683: Dshi_1683 - 6-phosphogluconolactonase (RefSeq), at 1,752,430 to 1,753,104 _1683 Dshi_1684: Dshi_1684 - glucose-6-phosphate 1-dehydrogenase (RefSeq), at 1,753,116 to 1,754,570 _1684 Dshi_1685: Dshi_1685 - Radical SAM domain protein (RefSeq), at 1,754,813 to 1,755,757 _1685 Position (kb) 1753 1754 1755Strain fitness (log2 ratio) -2 -1 0 1at 1752.523 kb on + strand, within Dshi_1683at 1752.523 kb on + strand, within Dshi_1683at 1752.573 kb on + strand, within Dshi_1683at 1752.687 kb on + strand, within Dshi_1683at 1752.866 kb on - strand, within Dshi_1683at 1754.586 kb on - strandat 1754.587 kb on + strandat 1754.629 kb on + strandat 1754.723 kb on + strandat 1754.760 kb on - strandat 1754.878 kb on - strandat 1754.930 kb on - strand, within Dshi_1685at 1754.986 kb on - strand, within Dshi_1685at 1754.992 kb on + strand, within Dshi_1685at 1755.001 kb on - strand, within Dshi_1685at 1755.001 kb on - strand, within Dshi_1685at 1755.054 kb on - strand, within Dshi_1685at 1755.115 kb on + strand, within Dshi_1685at 1755.138 kb on + strand, within Dshi_1685at 1755.255 kb on - strand, within Dshi_1685at 1755.421 kb on + strand, within Dshi_1685at 1755.461 kb on - strand, within Dshi_1685at 1755.498 kb on + strand, within Dshi_1685

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,752,523 + Dshi_1683 0.14 -1.1
1,752,523 + Dshi_1683 0.14 -0.8
1,752,573 + Dshi_1683 0.21 -1.3
1,752,687 + Dshi_1683 0.38 -1.9
1,752,866 - Dshi_1683 0.65 -2.3
1,754,586 - -0.3
1,754,587 + -0.1
1,754,629 + +0.4
1,754,723 + +0.5
1,754,760 - +0.8
1,754,878 - -0.1
1,754,930 - Dshi_1685 0.12 -0.3
1,754,986 - Dshi_1685 0.18 +0.4
1,754,992 + Dshi_1685 0.19 +1.4
1,755,001 - Dshi_1685 0.20 +0.7
1,755,001 - Dshi_1685 0.20 +0.3
1,755,054 - Dshi_1685 0.26 +0.3
1,755,115 + Dshi_1685 0.32 -0.7
1,755,138 + Dshi_1685 0.34 -0.1
1,755,255 - Dshi_1685 0.47 -0.1
1,755,421 + Dshi_1685 0.64 +0.1
1,755,461 - Dshi_1685 0.69 -0.9
1,755,498 + Dshi_1685 0.72 -0.8

Or see this region's nucleotide sequence