Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1609

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1608 and Dshi_1609 are separated by 70 nucleotidesDshi_1609 and Dshi_1610 are separated by 188 nucleotides Dshi_1608: Dshi_1608 - 3-dehydroquinate synthase (RefSeq), at 1,671,408 to 1,672,559 _1608 Dshi_1609: Dshi_1609 - Shikimate kinase (RefSeq), at 1,672,630 to 1,673,187 _1609 Dshi_1610: Dshi_1610 - hypothetical protein (RefSeq), at 1,673,376 to 1,674,959 _1610 Position (kb) 1672 1673 1674Strain fitness (log2 ratio) -3 -2 -1 0 1at 1672.616 kb on + strandat 1673.299 kb on - strandat 1673.445 kb on + strandat 1673.475 kb on + strandat 1673.491 kb on - strandat 1673.609 kb on + strand, within Dshi_1610at 1673.710 kb on - strand, within Dshi_1610at 1673.839 kb on - strand, within Dshi_1610at 1673.859 kb on + strand, within Dshi_1610at 1673.867 kb on - strand, within Dshi_1610at 1673.873 kb on - strand, within Dshi_1610at 1673.984 kb on - strand, within Dshi_1610at 1674.023 kb on - strand, within Dshi_1610at 1674.072 kb on + strand, within Dshi_1610

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,672,616 + +0.2
1,673,299 - -0.9
1,673,445 + -0.5
1,673,475 + -3.2
1,673,491 - +0.2
1,673,609 + Dshi_1610 0.15 -0.3
1,673,710 - Dshi_1610 0.21 +1.0
1,673,839 - Dshi_1610 0.29 +0.2
1,673,859 + Dshi_1610 0.30 -1.5
1,673,867 - Dshi_1610 0.31 -1.0
1,673,873 - Dshi_1610 0.31 -0.5
1,673,984 - Dshi_1610 0.38 +0.1
1,674,023 - Dshi_1610 0.41 +1.1
1,674,072 + Dshi_1610 0.44 -0.9

Or see this region's nucleotide sequence