Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1488 and Dshi_1489 are separated by 10 nucleotides Dshi_1489 and Dshi_1490 are separated by 95 nucleotides
Dshi_1488: Dshi_1488 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,546,583 to 1,547,743
_1488
Dshi_1489: Dshi_1489 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,547,754 to 1,548,845
_1489
Dshi_1490: Dshi_1490 - extracellular solute-binding protein family 5 (RefSeq), at 1,548,941 to 1,550,608
_1490
Position (kb)
1547
1548
1549 Strain fitness (log2 ratio)
-1
0
1
2 at 1546.770 kb on + strand, within Dshi_1488 at 1546.780 kb on + strand, within Dshi_1488 at 1547.052 kb on - strand, within Dshi_1488 at 1547.473 kb on - strand, within Dshi_1488 at 1547.664 kb on - strand at 1547.942 kb on - strand, within Dshi_1489 at 1548.048 kb on - strand, within Dshi_1489 at 1548.048 kb on - strand, within Dshi_1489 at 1548.097 kb on + strand, within Dshi_1489 at 1548.152 kb on + strand, within Dshi_1489 at 1548.199 kb on + strand, within Dshi_1489 at 1548.618 kb on + strand, within Dshi_1489 at 1548.809 kb on - strand at 1549.088 kb on + strand at 1549.557 kb on + strand, within Dshi_1490 at 1549.581 kb on + strand, within Dshi_1490 at 1549.617 kb on + strand, within Dshi_1490
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 1,546,770 + Dshi_1488 0.16 +0.1 1,546,780 + Dshi_1488 0.17 +0.8 1,547,052 - Dshi_1488 0.40 -0.1 1,547,473 - Dshi_1488 0.77 +0.3 1,547,664 - -0.7 1,547,942 - Dshi_1489 0.17 -0.1 1,548,048 - Dshi_1489 0.27 -0.2 1,548,048 - Dshi_1489 0.27 -0.4 1,548,097 + Dshi_1489 0.31 -0.3 1,548,152 + Dshi_1489 0.36 +0.1 1,548,199 + Dshi_1489 0.41 +0.6 1,548,618 + Dshi_1489 0.79 +1.7 1,548,809 - -1.0 1,549,088 + +2.3 1,549,557 + Dshi_1490 0.37 +2.0 1,549,581 + Dshi_1490 0.38 +2.0 1,549,617 + Dshi_1490 0.41 +2.4
Or see this region's nucleotide sequence