Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1488

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1487 and Dshi_1488 are separated by 69 nucleotidesDshi_1488 and Dshi_1489 are separated by 10 nucleotides Dshi_1487: Dshi_1487 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 1,544,432 to 1,546,513 _1487 Dshi_1488: Dshi_1488 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,546,583 to 1,547,743 _1488 Dshi_1489: Dshi_1489 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,547,754 to 1,548,845 _1489 Position (kb) 1546 1547 1548Strain fitness (log2 ratio) -1 0 1at 1545.819 kb on + strand, within Dshi_1487at 1545.827 kb on - strand, within Dshi_1487at 1545.875 kb on - strand, within Dshi_1487at 1546.029 kb on + strand, within Dshi_1487at 1546.037 kb on - strand, within Dshi_1487at 1546.070 kb on - strand, within Dshi_1487at 1546.135 kb on - strand, within Dshi_1487at 1546.350 kb on + strandat 1546.494 kb on - strandat 1546.550 kb on - strandat 1546.636 kb on + strandat 1546.636 kb on + strandat 1546.651 kb on + strandat 1546.770 kb on + strand, within Dshi_1488at 1546.780 kb on + strand, within Dshi_1488at 1547.052 kb on - strand, within Dshi_1488at 1547.473 kb on - strand, within Dshi_1488at 1547.664 kb on - strandat 1547.942 kb on - strand, within Dshi_1489at 1548.048 kb on - strand, within Dshi_1489at 1548.048 kb on - strand, within Dshi_1489at 1548.097 kb on + strand, within Dshi_1489at 1548.152 kb on + strand, within Dshi_1489at 1548.199 kb on + strand, within Dshi_1489at 1548.618 kb on + strand, within Dshi_1489

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,545,819 + Dshi_1487 0.67 +0.7
1,545,827 - Dshi_1487 0.67 +0.9
1,545,875 - Dshi_1487 0.69 -0.6
1,546,029 + Dshi_1487 0.77 -0.4
1,546,037 - Dshi_1487 0.77 +0.0
1,546,070 - Dshi_1487 0.79 -0.4
1,546,135 - Dshi_1487 0.82 +1.5
1,546,350 + +0.0
1,546,494 - -0.1
1,546,550 - +0.5
1,546,636 + -0.1
1,546,636 + -0.4
1,546,651 + -0.6
1,546,770 + Dshi_1488 0.16 +0.1
1,546,780 + Dshi_1488 0.17 +0.8
1,547,052 - Dshi_1488 0.40 -0.1
1,547,473 - Dshi_1488 0.77 +0.3
1,547,664 - -0.7
1,547,942 - Dshi_1489 0.17 -0.1
1,548,048 - Dshi_1489 0.27 -0.2
1,548,048 - Dshi_1489 0.27 -0.4
1,548,097 + Dshi_1489 0.31 -0.3
1,548,152 + Dshi_1489 0.36 +0.1
1,548,199 + Dshi_1489 0.41 +0.6
1,548,618 + Dshi_1489 0.79 +1.7

Or see this region's nucleotide sequence