Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1150

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1148 and Dshi_1149 are separated by 145 nucleotidesDshi_1149 and Dshi_1150 are separated by 152 nucleotidesDshi_1150 and Dshi_1151 are separated by 67 nucleotidesDshi_1151 and Dshi_1152 overlap by 4 nucleotides Dshi_1148: Dshi_1148 - GCN5-related N-acetyltransferase (RefSeq), at 1,175,081 to 1,175,665 _1148 Dshi_1149: Dshi_1149 - translation initiation factor IF-3 (RefSeq), at 1,175,811 to 1,176,419 _1149 Dshi_1150: Dshi_1150 - Ferredoxin--NADP(+) reductase (RefSeq), at 1,176,572 to 1,177,432 _1150 Dshi_1151: Dshi_1151 - hypothetical protein (RefSeq), at 1,177,500 to 1,177,916 _1151 Dshi_1152: Dshi_1152 - phosphoadenosine phosphosulfate reductase (RefSeq), at 1,177,913 to 1,178,668 _1152 Position (kb) 1176 1177 1178Strain fitness (log2 ratio) -1 0 1at 1176.445 kb on - strandat 1176.466 kb on - strandat 1176.525 kb on + strandat 1176.533 kb on - strandat 1177.519 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,176,445 - +0.1
1,176,466 - +0.2
1,176,525 + +1.6
1,176,533 - +0.6
1,177,519 + -1.3

Or see this region's nucleotide sequence