Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2058

Experiment: MoLS4 with L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2057 and DVU2058 are separated by 205 nucleotidesDVU2058 and DVU2059 are separated by 14 nucleotides DVU2057: DVU2057 - conserved hypothetical protein (TIGR), at 2,133,364 to 2,134,827 DVU2057 DVU2058: DVU2058 - HDIG domain protein (TIGR), at 2,135,033 to 2,135,596 DVU2058 DVU2059: DVU2059 - glycosyl transferase, group 2 family protein (TIGR), at 2,135,611 to 2,136,603 DVU2059 Position (kb) 2135 2136Strain fitness (log2 ratio) -1 0 1at 2134.699 kb on - strandat 2135.038 kb on + strandat 2135.225 kb on + strand, within DVU2058at 2135.225 kb on + strand, within DVU2058at 2135.320 kb on + strand, within DVU2058at 2135.335 kb on + strand, within DVU2058at 2135.343 kb on - strand, within DVU2058at 2135.350 kb on + strand, within DVU2058at 2135.350 kb on + strand, within DVU2058at 2135.353 kb on - strand, within DVU2058at 2135.358 kb on - strand, within DVU2058at 2135.358 kb on - strand, within DVU2058at 2135.435 kb on - strand, within DVU2058at 2135.597 kb on + strandat 2135.616 kb on + strandat 2135.779 kb on + strand, within DVU2059at 2135.909 kb on - strand, within DVU2059at 2135.975 kb on - strand, within DVU2059at 2135.984 kb on + strand, within DVU2059at 2136.043 kb on - strand, within DVU2059at 2136.058 kb on + strand, within DVU2059at 2136.132 kb on + strand, within DVU2059at 2136.135 kb on - strand, within DVU2059at 2136.309 kb on + strand, within DVU2059at 2136.317 kb on - strand, within DVU2059at 2136.334 kb on + strand, within DVU2059at 2136.346 kb on + strand, within DVU2059at 2136.349 kb on - strand, within DVU2059at 2136.432 kb on + strand, within DVU2059at 2136.432 kb on + strand, within DVU2059at 2136.440 kb on - strand, within DVU2059at 2136.440 kb on - strand, within DVU2059at 2136.457 kb on + strand, within DVU2059at 2136.514 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Asparagine (N)
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2,134,699 - +0.4
2,135,038 + +0.0
2,135,225 + DVU2058 0.34 -1.4
2,135,225 + DVU2058 0.34 +1.1
2,135,320 + DVU2058 0.51 -0.8
2,135,335 + DVU2058 0.54 -0.4
2,135,343 - DVU2058 0.55 -1.7
2,135,350 + DVU2058 0.56 -1.0
2,135,350 + DVU2058 0.56 -0.1
2,135,353 - DVU2058 0.57 -0.7
2,135,358 - DVU2058 0.58 -0.2
2,135,358 - DVU2058 0.58 -0.3
2,135,435 - DVU2058 0.71 -1.5
2,135,597 + -0.1
2,135,616 + -0.1
2,135,779 + DVU2059 0.17 -0.1
2,135,909 - DVU2059 0.30 -0.5
2,135,975 - DVU2059 0.37 -1.7
2,135,984 + DVU2059 0.38 +0.4
2,136,043 - DVU2059 0.44 -0.1
2,136,058 + DVU2059 0.45 +1.4
2,136,132 + DVU2059 0.52 -1.1
2,136,135 - DVU2059 0.53 -0.2
2,136,309 + DVU2059 0.70 -0.2
2,136,317 - DVU2059 0.71 -0.6
2,136,334 + DVU2059 0.73 -0.9
2,136,346 + DVU2059 0.74 -0.1
2,136,349 - DVU2059 0.74 +0.0
2,136,432 + DVU2059 0.83 -0.5
2,136,432 + DVU2059 0.83 -1.1
2,136,440 - DVU2059 0.83 -0.0
2,136,440 - DVU2059 0.83 -0.1
2,136,457 + DVU2059 0.85 +0.1
2,136,514 + -0.0

Or see this region's nucleotide sequence