Experiment: L-Malic Acid (C) and N2; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3580 and Rru_A3581 are separated by 110 nucleotides Rru_A3581 and Rru_A3582 are separated by 99 nucleotides Rru_A3582 and Rru_A3583 are separated by 59 nucleotides Rru_A3583 and Rru_A3584 are separated by 17 nucleotides Rru_A3584 and Rru_A3585 overlap by 1 nucleotides
Rru_A3580: Rru_A3580 - Protein of unknown function DUF6, transmembrane (NCBI), at 4,123,691 to 4,124,575
_A3580
Rru_A3581: Rru_A3581 - Transcriptional coactivator/pterin dehydratase (NCBI), at 4,124,686 to 4,124,976
_A3581
Rru_A3582: Rru_A3582 - Protein of unknown function DUF1025 (NCBI), at 4,125,076 to 4,125,483
_A3582
Rru_A3583: Rru_A3583 - ATP-dependent protease-like (NCBI), at 4,125,543 to 4,127,525
_A3583
Rru_A3584: Rru_A3584 - CDP-diacylglycerol--serineO-phosphatidyltransferase (NCBI), at 4,127,543 to 4,128,370
_A3584
Rru_A3585: Rru_A3585 - Phosphatidylserine decarboxylase-related protein (NCBI), at 4,128,370 to 4,129,080
_A3585
Position (kb) 4125
4126
4127
4128 Strain fitness (log2 ratio) -1
0
1 at 4124.642 kb on + strand at 4124.769 kb on + strand, within Rru_A3581 at 4124.769 kb on + strand, within Rru_A3581 at 4124.770 kb on - strand, within Rru_A3581 at 4124.783 kb on + strand, within Rru_A3581 at 4124.783 kb on + strand, within Rru_A3581 at 4125.058 kb on + strand at 4125.058 kb on + strand at 4125.058 kb on + strand at 4125.059 kb on - strand at 4125.085 kb on - strand at 4125.362 kb on - strand, within Rru_A3582 at 4125.481 kb on + strand at 4125.481 kb on + strand at 4125.482 kb on - strand at 4125.482 kb on - strand at 4125.500 kb on - strand at 4125.500 kb on - strand at 4125.521 kb on - strand at 4125.707 kb on + strand at 4125.707 kb on + strand at 4125.707 kb on + strand at 4125.707 kb on + strand at 4125.708 kb on - strand at 4125.708 kb on - strand at 4125.708 kb on - strand at 4125.708 kb on - strand at 4125.708 kb on - strand at 4125.708 kb on - strand at 4125.708 kb on - strand at 4126.205 kb on - strand, within Rru_A3583 at 4126.220 kb on + strand, within Rru_A3583 at 4126.396 kb on - strand, within Rru_A3583 at 4126.396 kb on - strand, within Rru_A3583 at 4126.398 kb on + strand, within Rru_A3583 at 4126.398 kb on + strand, within Rru_A3583 at 4126.398 kb on + strand, within Rru_A3583 at 4126.398 kb on + strand, within Rru_A3583 at 4126.845 kb on + strand, within Rru_A3583 at 4127.052 kb on + strand, within Rru_A3583 at 4127.052 kb on + strand, within Rru_A3583 at 4127.052 kb on + strand, within Rru_A3583 at 4127.053 kb on - strand, within Rru_A3583 at 4127.053 kb on - strand, within Rru_A3583 at 4127.095 kb on - strand, within Rru_A3583 at 4127.095 kb on - strand, within Rru_A3583 at 4127.344 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light remove 4,124,642 + -0.5 4,124,769 + Rru_A3581 0.29 +0.1 4,124,769 + Rru_A3581 0.29 -1.1 4,124,770 - Rru_A3581 0.29 -1.5 4,124,783 + Rru_A3581 0.33 +0.1 4,124,783 + Rru_A3581 0.33 +0.1 4,125,058 + +0.1 4,125,058 + +0.1 4,125,058 + +0.1 4,125,059 - -1.1 4,125,085 - +0.1 4,125,362 - Rru_A3582 0.70 +0.1 4,125,481 + -0.8 4,125,481 + +0.1 4,125,482 - -0.8 4,125,482 - +0.1 4,125,500 - -1.5 4,125,500 - -1.1 4,125,521 - +0.1 4,125,707 + +0.1 4,125,707 + -1.7 4,125,707 + -0.9 4,125,707 + -0.9 4,125,708 - +0.1 4,125,708 - -1.1 4,125,708 - -0.9 4,125,708 - -1.0 4,125,708 - +0.1 4,125,708 - -0.9 4,125,708 - +0.1 4,126,205 - Rru_A3583 0.33 +0.1 4,126,220 + Rru_A3583 0.34 +0.1 4,126,396 - Rru_A3583 0.43 -1.3 4,126,396 - Rru_A3583 0.43 -1.0 4,126,398 + Rru_A3583 0.43 -1.0 4,126,398 + Rru_A3583 0.43 -0.9 4,126,398 + Rru_A3583 0.43 -0.9 4,126,398 + Rru_A3583 0.43 -0.9 4,126,845 + Rru_A3583 0.66 +0.1 4,127,052 + Rru_A3583 0.76 +0.1 4,127,052 + Rru_A3583 0.76 +0.1 4,127,052 + Rru_A3583 0.76 +0.1 4,127,053 - Rru_A3583 0.76 -0.8 4,127,053 - Rru_A3583 0.76 -0.7 4,127,095 - Rru_A3583 0.78 +0.1 4,127,095 - Rru_A3583 0.78 -0.9 4,127,344 - +0.1
Or see this region's nucleotide sequence