Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3452

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3450 and Rru_A3451 are separated by 188 nucleotidesRru_A3451 and Rru_A3452 are separated by 88 nucleotidesRru_A3452 and Rru_A3453 are separated by 415 nucleotides Rru_A3450: Rru_A3450 - Ribonuclease T2 (NCBI), at 3,973,519 to 3,974,589 _A3450 Rru_A3451: Rru_A3451 - hypothetical protein (NCBI), at 3,974,778 to 3,975,164 _A3451 Rru_A3452: Rru_A3452 - TonB-dependent receptor (NCBI), at 3,975,253 to 3,977,352 _A3452 Rru_A3453: Rru_A3453 - ABC transporter component (NCBI), at 3,977,768 to 3,978,595 _A3453 Position (kb) 3975 3976 3977 3978Strain fitness (log2 ratio) -2 -1 0 1at 3974.266 kb on + strand, within Rru_A3450at 3974.267 kb on - strand, within Rru_A3450at 3974.269 kb on + strand, within Rru_A3450at 3974.270 kb on - strand, within Rru_A3450at 3974.468 kb on + strand, within Rru_A3450at 3974.730 kb on + strandat 3974.731 kb on - strandat 3974.809 kb on + strandat 3974.809 kb on + strandat 3974.810 kb on - strandat 3975.001 kb on - strand, within Rru_A3451at 3975.230 kb on + strandat 3975.230 kb on + strandat 3975.231 kb on - strandat 3975.231 kb on - strandat 3975.643 kb on + strand, within Rru_A3452at 3975.643 kb on + strand, within Rru_A3452at 3975.643 kb on + strand, within Rru_A3452at 3975.643 kb on + strand, within Rru_A3452at 3975.643 kb on + strand, within Rru_A3452at 3975.643 kb on + strand, within Rru_A3452at 3975.644 kb on - strand, within Rru_A3452at 3975.644 kb on - strand, within Rru_A3452at 3975.644 kb on - strand, within Rru_A3452at 3975.644 kb on - strand, within Rru_A3452at 3975.644 kb on - strand, within Rru_A3452at 3975.644 kb on - strand, within Rru_A3452at 3975.644 kb on - strand, within Rru_A3452at 3975.644 kb on - strand, within Rru_A3452at 3975.644 kb on - strand, within Rru_A3452at 3975.644 kb on - strand, within Rru_A3452at 3975.644 kb on - strand, within Rru_A3452at 3975.644 kb on - strand, within Rru_A3452at 3975.877 kb on + strand, within Rru_A3452at 3975.947 kb on - strand, within Rru_A3452at 3976.150 kb on + strand, within Rru_A3452at 3976.151 kb on - strand, within Rru_A3452at 3976.151 kb on - strand, within Rru_A3452at 3976.151 kb on - strand, within Rru_A3452at 3976.151 kb on - strand, within Rru_A3452at 3976.151 kb on - strand, within Rru_A3452at 3976.151 kb on - strand, within Rru_A3452at 3976.300 kb on + strand, within Rru_A3452at 3976.301 kb on - strand, within Rru_A3452at 3976.301 kb on - strand, within Rru_A3452at 3976.302 kb on + strand, within Rru_A3452at 3976.302 kb on + strand, within Rru_A3452at 3976.342 kb on + strand, within Rru_A3452at 3976.342 kb on + strand, within Rru_A3452at 3976.342 kb on + strand, within Rru_A3452at 3976.342 kb on + strand, within Rru_A3452at 3976.342 kb on + strand, within Rru_A3452at 3976.342 kb on + strand, within Rru_A3452at 3976.343 kb on - strand, within Rru_A3452at 3976.343 kb on - strand, within Rru_A3452at 3976.343 kb on - strand, within Rru_A3452at 3976.450 kb on + strand, within Rru_A3452at 3976.450 kb on + strand, within Rru_A3452at 3976.450 kb on + strand, within Rru_A3452at 3976.451 kb on - strand, within Rru_A3452at 3976.526 kb on - strand, within Rru_A3452at 3976.535 kb on - strand, within Rru_A3452at 3976.538 kb on - strand, within Rru_A3452at 3976.626 kb on + strand, within Rru_A3452at 3976.659 kb on + strand, within Rru_A3452at 3976.807 kb on - strand, within Rru_A3452at 3976.819 kb on + strand, within Rru_A3452at 3976.819 kb on + strand, within Rru_A3452at 3976.819 kb on + strand, within Rru_A3452at 3976.819 kb on + strand, within Rru_A3452at 3976.819 kb on + strand, within Rru_A3452at 3976.819 kb on + strand, within Rru_A3452at 3976.820 kb on - strand, within Rru_A3452at 3976.820 kb on - strand, within Rru_A3452at 3976.820 kb on - strand, within Rru_A3452at 3976.821 kb on + strand, within Rru_A3452at 3976.821 kb on + strand, within Rru_A3452at 3976.822 kb on - strand, within Rru_A3452at 3976.822 kb on - strand, within Rru_A3452at 3976.822 kb on - strand, within Rru_A3452at 3976.826 kb on + strand, within Rru_A3452at 3976.826 kb on + strand, within Rru_A3452at 3976.826 kb on + strand, within Rru_A3452at 3976.827 kb on - strand, within Rru_A3452at 3976.827 kb on - strand, within Rru_A3452at 3976.827 kb on - strand, within Rru_A3452at 3976.827 kb on - strand, within Rru_A3452at 3976.827 kb on - strand, within Rru_A3452at 3976.827 kb on - strand, within Rru_A3452at 3976.827 kb on - strand, within Rru_A3452at 3976.827 kb on - strand, within Rru_A3452at 3976.831 kb on - strand, within Rru_A3452at 3976.882 kb on + strand, within Rru_A3452at 3976.882 kb on + strand, within Rru_A3452at 3976.883 kb on - strand, within Rru_A3452at 3976.883 kb on - strand, within Rru_A3452at 3977.050 kb on + strand, within Rru_A3452at 3977.050 kb on + strand, within Rru_A3452at 3977.050 kb on + strand, within Rru_A3452at 3977.051 kb on - strand, within Rru_A3452at 3977.051 kb on - strand, within Rru_A3452at 3977.051 kb on - strand, within Rru_A3452at 3977.051 kb on - strand, within Rru_A3452at 3977.051 kb on - strand, within Rru_A3452at 3977.051 kb on - strand, within Rru_A3452at 3977.051 kb on - strand, within Rru_A3452at 3977.251 kb on + strandat 3977.251 kb on + strandat 3977.251 kb on + strandat 3977.252 kb on - strandat 3977.277 kb on + strandat 3977.278 kb on - strandat 3977.326 kb on + strandat 3977.326 kb on + strandat 3977.327 kb on - strandat 3977.350 kb on + strandat 3977.351 kb on - strandat 3977.351 kb on - strandat 3977.410 kb on + strandat 3977.413 kb on + strandat 3977.437 kb on + strandat 3977.438 kb on - strandat 3977.688 kb on + strandat 3977.688 kb on + strandat 3977.689 kb on - strandat 3977.689 kb on - strandat 3977.689 kb on - strandat 3977.779 kb on + strandat 3977.780 kb on - strandat 3977.855 kb on + strand, within Rru_A3453at 3977.855 kb on + strand, within Rru_A3453at 3977.856 kb on - strand, within Rru_A3453at 3977.856 kb on - strand, within Rru_A3453at 3978.056 kb on + strand, within Rru_A3453at 3978.057 kb on - strand, within Rru_A3453at 3978.062 kb on + strand, within Rru_A3453at 3978.062 kb on + strand, within Rru_A3453at 3978.063 kb on - strand, within Rru_A3453

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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3,974,266 + Rru_A3450 0.70 +0.0
3,974,267 - Rru_A3450 0.70 -1.0
3,974,269 + Rru_A3450 0.70 +0.0
3,974,270 - Rru_A3450 0.70 -1.0
3,974,468 + Rru_A3450 0.89 +0.0
3,974,730 + -1.0
3,974,731 - +0.0
3,974,809 + +0.0
3,974,809 + +0.0
3,974,810 - -1.0
3,975,001 - Rru_A3451 0.58 +0.0
3,975,230 + -1.3
3,975,230 + +0.0
3,975,231 - +0.0
3,975,231 - +0.0
3,975,643 + Rru_A3452 0.19 +0.0
3,975,643 + Rru_A3452 0.19 +0.0
3,975,643 + Rru_A3452 0.19 +0.0
3,975,643 + Rru_A3452 0.19 -0.9
3,975,643 + Rru_A3452 0.19 +0.0
3,975,643 + Rru_A3452 0.19 +0.0
3,975,644 - Rru_A3452 0.19 +0.0
3,975,644 - Rru_A3452 0.19 -1.0
3,975,644 - Rru_A3452 0.19 +0.0
3,975,644 - Rru_A3452 0.19 -0.9
3,975,644 - Rru_A3452 0.19 +0.0
3,975,644 - Rru_A3452 0.19 +0.0
3,975,644 - Rru_A3452 0.19 +0.0
3,975,644 - Rru_A3452 0.19 +0.0
3,975,644 - Rru_A3452 0.19 +0.0
3,975,644 - Rru_A3452 0.19 +0.0
3,975,644 - Rru_A3452 0.19 +0.0
3,975,644 - Rru_A3452 0.19 +0.0
3,975,877 + Rru_A3452 0.30 +0.0
3,975,947 - Rru_A3452 0.33 +0.0
3,976,150 + Rru_A3452 0.43 -1.0
3,976,151 - Rru_A3452 0.43 +0.0
3,976,151 - Rru_A3452 0.43 +0.0
3,976,151 - Rru_A3452 0.43 -0.9
3,976,151 - Rru_A3452 0.43 +0.0
3,976,151 - Rru_A3452 0.43 +0.0
3,976,151 - Rru_A3452 0.43 +0.0
3,976,300 + Rru_A3452 0.50 +0.0
3,976,301 - Rru_A3452 0.50 +0.0
3,976,301 - Rru_A3452 0.50 +0.0
3,976,302 + Rru_A3452 0.50 -1.0
3,976,302 + Rru_A3452 0.50 +0.0
3,976,342 + Rru_A3452 0.52 +0.0
3,976,342 + Rru_A3452 0.52 +0.0
3,976,342 + Rru_A3452 0.52 +0.0
3,976,342 + Rru_A3452 0.52 +0.0
3,976,342 + Rru_A3452 0.52 -1.0
3,976,342 + Rru_A3452 0.52 -0.9
3,976,343 - Rru_A3452 0.52 +0.0
3,976,343 - Rru_A3452 0.52 -1.1
3,976,343 - Rru_A3452 0.52 -0.3
3,976,450 + Rru_A3452 0.57 +0.0
3,976,450 + Rru_A3452 0.57 -1.2
3,976,450 + Rru_A3452 0.57 +0.0
3,976,451 - Rru_A3452 0.57 +0.0
3,976,526 - Rru_A3452 0.61 +0.0
3,976,535 - Rru_A3452 0.61 +0.0
3,976,538 - Rru_A3452 0.61 -1.0
3,976,626 + Rru_A3452 0.65 -1.0
3,976,659 + Rru_A3452 0.67 -0.7
3,976,807 - Rru_A3452 0.74 -1.0
3,976,819 + Rru_A3452 0.75 +0.0
3,976,819 + Rru_A3452 0.75 +0.0
3,976,819 + Rru_A3452 0.75 +0.0
3,976,819 + Rru_A3452 0.75 +0.0
3,976,819 + Rru_A3452 0.75 +0.0
3,976,819 + Rru_A3452 0.75 +0.0
3,976,820 - Rru_A3452 0.75 -1.5
3,976,820 - Rru_A3452 0.75 +0.0
3,976,820 - Rru_A3452 0.75 +0.0
3,976,821 + Rru_A3452 0.75 -1.0
3,976,821 + Rru_A3452 0.75 -0.7
3,976,822 - Rru_A3452 0.75 -1.1
3,976,822 - Rru_A3452 0.75 -0.8
3,976,822 - Rru_A3452 0.75 +0.0
3,976,826 + Rru_A3452 0.75 +0.0
3,976,826 + Rru_A3452 0.75 +0.0
3,976,826 + Rru_A3452 0.75 +0.0
3,976,827 - Rru_A3452 0.75 +0.0
3,976,827 - Rru_A3452 0.75 +0.0
3,976,827 - Rru_A3452 0.75 +0.0
3,976,827 - Rru_A3452 0.75 +0.0
3,976,827 - Rru_A3452 0.75 +0.0
3,976,827 - Rru_A3452 0.75 -1.3
3,976,827 - Rru_A3452 0.75 +0.0
3,976,827 - Rru_A3452 0.75 +0.0
3,976,831 - Rru_A3452 0.75 -1.2
3,976,882 + Rru_A3452 0.78 +0.0
3,976,882 + Rru_A3452 0.78 +0.0
3,976,883 - Rru_A3452 0.78 -1.5
3,976,883 - Rru_A3452 0.78 -1.0
3,977,050 + Rru_A3452 0.86 +0.0
3,977,050 + Rru_A3452 0.86 -0.8
3,977,050 + Rru_A3452 0.86 +0.0
3,977,051 - Rru_A3452 0.86 +0.0
3,977,051 - Rru_A3452 0.86 +0.0
3,977,051 - Rru_A3452 0.86 +0.0
3,977,051 - Rru_A3452 0.86 +0.0
3,977,051 - Rru_A3452 0.86 +0.0
3,977,051 - Rru_A3452 0.86 +0.0
3,977,051 - Rru_A3452 0.86 -1.0
3,977,251 + +0.0
3,977,251 + -0.8
3,977,251 + +0.0
3,977,252 - +0.0
3,977,277 + +0.0
3,977,278 - -1.9
3,977,326 + +0.0
3,977,326 + +0.0
3,977,327 - +0.0
3,977,350 + +0.0
3,977,351 - -1.3
3,977,351 - -0.9
3,977,410 + -0.2
3,977,413 + +0.0
3,977,437 + -1.3
3,977,438 - +0.0
3,977,688 + -0.6
3,977,688 + +0.0
3,977,689 - -1.2
3,977,689 - -1.1
3,977,689 - +0.0
3,977,779 + +0.0
3,977,780 - -1.1
3,977,855 + Rru_A3453 0.11 -0.9
3,977,855 + Rru_A3453 0.11 -0.7
3,977,856 - Rru_A3453 0.11 +0.0
3,977,856 - Rru_A3453 0.11 +0.0
3,978,056 + Rru_A3453 0.35 +0.0
3,978,057 - Rru_A3453 0.35 -1.1
3,978,062 + Rru_A3453 0.36 +0.0
3,978,062 + Rru_A3453 0.36 +0.0
3,978,063 - Rru_A3453 0.36 -0.7

Or see this region's nucleotide sequence