Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3415

Experiment: L-Malic Acid (C) and N2; high light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3413 and Rru_A3414 overlap by 4 nucleotidesRru_A3414 and Rru_A3415 overlap by 4 nucleotidesRru_A3415 and Rru_A3416 are separated by 21 nucleotidesRru_A3416 and Rru_A3417 are separated by 83 nucleotides Rru_A3413: Rru_A3413 - ABC transporter component (NCBI), at 3,929,649 to 3,930,350 _A3413 Rru_A3414: Rru_A3414 - ABC transporter component (NCBI), at 3,930,347 to 3,931,114 _A3414 Rru_A3415: Rru_A3415 - inner-membrane translocator (NCBI), at 3,931,111 to 3,931,998 _A3415 Rru_A3416: Rru_A3416 - inner-membrane translocator (NCBI), at 3,932,020 to 3,932,892 _A3416 Rru_A3417: Rru_A3417 - Extracellular ligand-binding receptor (NCBI), at 3,932,976 to 3,934,205 _A3417 Position (kb) 3931 3932Strain fitness (log2 ratio) -2 -1 0 1at 3930.113 kb on + strand, within Rru_A3413at 3930.114 kb on - strand, within Rru_A3413at 3930.114 kb on - strand, within Rru_A3413at 3930.125 kb on + strand, within Rru_A3413at 3930.350 kb on + strandat 3930.351 kb on - strandat 3930.351 kb on - strandat 3930.351 kb on - strandat 3930.364 kb on + strandat 3930.365 kb on - strandat 3930.365 kb on - strandat 3930.365 kb on - strandat 3930.366 kb on + strandat 3930.366 kb on + strandat 3930.366 kb on + strandat 3930.366 kb on + strandat 3930.366 kb on + strandat 3930.366 kb on + strandat 3930.366 kb on + strandat 3930.366 kb on + strandat 3930.366 kb on + strandat 3930.367 kb on - strandat 3930.367 kb on - strandat 3930.367 kb on - strandat 3930.367 kb on - strandat 3930.367 kb on - strandat 3930.367 kb on - strandat 3930.367 kb on - strandat 3930.481 kb on + strand, within Rru_A3414at 3930.481 kb on + strand, within Rru_A3414at 3930.481 kb on + strand, within Rru_A3414at 3930.482 kb on - strand, within Rru_A3414at 3930.605 kb on + strand, within Rru_A3414at 3930.606 kb on - strand, within Rru_A3414at 3930.606 kb on - strand, within Rru_A3414at 3930.606 kb on - strand, within Rru_A3414at 3930.623 kb on + strand, within Rru_A3414at 3931.078 kb on + strandat 3931.079 kb on - strandat 3931.080 kb on + strandat 3931.080 kb on + strandat 3931.080 kb on + strandat 3931.080 kb on + strandat 3931.080 kb on + strandat 3931.080 kb on + strandat 3931.080 kb on + strandat 3931.080 kb on + strandat 3931.080 kb on + strandat 3931.080 kb on + strandat 3931.080 kb on + strandat 3931.080 kb on + strandat 3931.080 kb on + strandat 3931.081 kb on - strandat 3931.081 kb on - strandat 3931.081 kb on - strandat 3931.081 kb on - strandat 3931.081 kb on - strandat 3931.189 kb on + strandat 3931.338 kb on + strand, within Rru_A3415at 3931.339 kb on - strand, within Rru_A3415at 3931.339 kb on - strand, within Rru_A3415at 3931.340 kb on + strand, within Rru_A3415at 3931.340 kb on + strand, within Rru_A3415at 3931.340 kb on + strand, within Rru_A3415at 3931.340 kb on + strand, within Rru_A3415at 3931.340 kb on + strand, within Rru_A3415at 3931.340 kb on + strand, within Rru_A3415at 3931.341 kb on - strand, within Rru_A3415at 3931.341 kb on - strand, within Rru_A3415at 3931.341 kb on - strand, within Rru_A3415at 3931.341 kb on - strand, within Rru_A3415at 3931.341 kb on - strand, within Rru_A3415at 3931.377 kb on + strand, within Rru_A3415at 3931.377 kb on + strand, within Rru_A3415at 3931.377 kb on + strand, within Rru_A3415at 3931.377 kb on + strand, within Rru_A3415at 3931.377 kb on + strand, within Rru_A3415at 3931.378 kb on - strand, within Rru_A3415at 3931.378 kb on - strand, within Rru_A3415at 3931.378 kb on - strand, within Rru_A3415at 3931.378 kb on - strand, within Rru_A3415at 3931.379 kb on + strand, within Rru_A3415at 3931.379 kb on + strand, within Rru_A3415at 3931.379 kb on + strand, within Rru_A3415at 3931.379 kb on + strand, within Rru_A3415at 3931.379 kb on + strand, within Rru_A3415at 3931.379 kb on + strand, within Rru_A3415at 3931.379 kb on + strand, within Rru_A3415at 3931.380 kb on - strand, within Rru_A3415at 3931.380 kb on - strand, within Rru_A3415at 3931.380 kb on - strand, within Rru_A3415at 3931.380 kb on - strand, within Rru_A3415at 3931.388 kb on + strand, within Rru_A3415at 3931.388 kb on + strand, within Rru_A3415at 3931.389 kb on - strand, within Rru_A3415at 3931.389 kb on - strand, within Rru_A3415at 3931.389 kb on - strand, within Rru_A3415at 3931.389 kb on - strand, within Rru_A3415at 3931.397 kb on + strand, within Rru_A3415at 3931.618 kb on + strand, within Rru_A3415at 3931.618 kb on + strand, within Rru_A3415at 3931.619 kb on - strand, within Rru_A3415at 3931.742 kb on + strand, within Rru_A3415at 3931.743 kb on - strand, within Rru_A3415at 3931.743 kb on - strand, within Rru_A3415at 3931.863 kb on + strand, within Rru_A3415at 3931.863 kb on + strand, within Rru_A3415at 3931.864 kb on - strand, within Rru_A3415at 3931.864 kb on - strand, within Rru_A3415at 3931.864 kb on - strand, within Rru_A3415at 3931.864 kb on - strand, within Rru_A3415at 3931.864 kb on - strand, within Rru_A3415at 3931.865 kb on + strand, within Rru_A3415at 3931.866 kb on - strand, within Rru_A3415at 3931.866 kb on - strand, within Rru_A3415at 3931.923 kb on - strandat 3931.955 kb on + strandat 3931.955 kb on + strandat 3931.956 kb on - strandat 3931.988 kb on + strandat 3931.988 kb on + strandat 3931.988 kb on + strandat 3931.988 kb on + strandat 3931.989 kb on - strandat 3931.989 kb on - strandat 3932.109 kb on - strand, within Rru_A3416at 3932.109 kb on - strand, within Rru_A3416at 3932.109 kb on - strand, within Rru_A3416at 3932.335 kb on - strand, within Rru_A3416at 3932.335 kb on - strand, within Rru_A3416at 3932.555 kb on + strand, within Rru_A3416at 3932.555 kb on + strand, within Rru_A3416at 3932.555 kb on + strand, within Rru_A3416at 3932.556 kb on - strand, within Rru_A3416at 3932.556 kb on - strand, within Rru_A3416at 3932.651 kb on + strand, within Rru_A3416at 3932.651 kb on + strand, within Rru_A3416at 3932.651 kb on + strand, within Rru_A3416at 3932.651 kb on + strand, within Rru_A3416at 3932.652 kb on - strand, within Rru_A3416at 3932.652 kb on - strand, within Rru_A3416at 3932.652 kb on - strand, within Rru_A3416at 3932.652 kb on - strand, within Rru_A3416at 3932.652 kb on - strand, within Rru_A3416at 3932.652 kb on - strand, within Rru_A3416at 3932.652 kb on - strand, within Rru_A3416at 3932.872 kb on - strandat 3932.879 kb on + strandat 3932.879 kb on + strandat 3932.879 kb on + strandat 3932.954 kb on + strandat 3932.955 kb on - strandat 3932.955 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
remove
3,930,113 + Rru_A3413 0.66 +0.0
3,930,114 - Rru_A3413 0.66 +0.0
3,930,114 - Rru_A3413 0.66 -1.5
3,930,125 + Rru_A3413 0.68 -1.2
3,930,350 + +0.0
3,930,351 - -0.8
3,930,351 - +0.0
3,930,351 - +0.0
3,930,364 + +0.0
3,930,365 - -1.3
3,930,365 - +0.0
3,930,365 - +0.0
3,930,366 + -0.9
3,930,366 + +0.0
3,930,366 + +0.0
3,930,366 + -1.0
3,930,366 + +0.0
3,930,366 + +0.0
3,930,366 + -0.8
3,930,366 + +0.0
3,930,366 + +0.0
3,930,367 - +0.0
3,930,367 - +0.0
3,930,367 - +0.0
3,930,367 - +0.0
3,930,367 - +0.0
3,930,367 - -2.3
3,930,367 - +0.0
3,930,481 + Rru_A3414 0.17 -1.3
3,930,481 + Rru_A3414 0.17 +0.0
3,930,481 + Rru_A3414 0.17 +0.0
3,930,482 - Rru_A3414 0.18 -1.3
3,930,605 + Rru_A3414 0.34 +0.0
3,930,606 - Rru_A3414 0.34 -1.1
3,930,606 - Rru_A3414 0.34 -0.9
3,930,606 - Rru_A3414 0.34 +0.0
3,930,623 + Rru_A3414 0.36 -0.9
3,931,078 + -1.4
3,931,079 - +0.0
3,931,080 + +0.0
3,931,080 + -1.1
3,931,080 + +0.0
3,931,080 + +0.0
3,931,080 + -1.5
3,931,080 + +0.0
3,931,080 + -1.0
3,931,080 + +0.0
3,931,080 + +0.0
3,931,080 + +0.0
3,931,080 + +0.0
3,931,080 + -1.0
3,931,080 + -1.0
3,931,081 - +0.0
3,931,081 - +0.0
3,931,081 - +0.0
3,931,081 - +0.0
3,931,081 - +0.0
3,931,189 + +0.0
3,931,338 + Rru_A3415 0.26 -1.0
3,931,339 - Rru_A3415 0.26 +0.0
3,931,339 - Rru_A3415 0.26 +0.0
3,931,340 + Rru_A3415 0.26 +0.0
3,931,340 + Rru_A3415 0.26 +0.0
3,931,340 + Rru_A3415 0.26 +0.0
3,931,340 + Rru_A3415 0.26 +0.0
3,931,340 + Rru_A3415 0.26 -0.8
3,931,340 + Rru_A3415 0.26 -1.0
3,931,341 - Rru_A3415 0.26 +0.0
3,931,341 - Rru_A3415 0.26 +0.0
3,931,341 - Rru_A3415 0.26 +0.0
3,931,341 - Rru_A3415 0.26 +0.0
3,931,341 - Rru_A3415 0.26 +0.0
3,931,377 + Rru_A3415 0.30 -1.0
3,931,377 + Rru_A3415 0.30 +0.0
3,931,377 + Rru_A3415 0.30 +0.0
3,931,377 + Rru_A3415 0.30 +0.0
3,931,377 + Rru_A3415 0.30 +0.0
3,931,378 - Rru_A3415 0.30 +0.0
3,931,378 - Rru_A3415 0.30 -1.1
3,931,378 - Rru_A3415 0.30 +0.0
3,931,378 - Rru_A3415 0.30 +0.0
3,931,379 + Rru_A3415 0.30 +0.0
3,931,379 + Rru_A3415 0.30 +0.0
3,931,379 + Rru_A3415 0.30 +0.0
3,931,379 + Rru_A3415 0.30 -2.0
3,931,379 + Rru_A3415 0.30 -0.8
3,931,379 + Rru_A3415 0.30 -0.3
3,931,379 + Rru_A3415 0.30 +0.0
3,931,380 - Rru_A3415 0.30 -1.1
3,931,380 - Rru_A3415 0.30 -1.4
3,931,380 - Rru_A3415 0.30 -0.9
3,931,380 - Rru_A3415 0.30 +0.0
3,931,388 + Rru_A3415 0.31 +0.0
3,931,388 + Rru_A3415 0.31 +0.0
3,931,389 - Rru_A3415 0.31 +0.0
3,931,389 - Rru_A3415 0.31 +0.0
3,931,389 - Rru_A3415 0.31 -1.3
3,931,389 - Rru_A3415 0.31 +0.0
3,931,397 + Rru_A3415 0.32 +0.0
3,931,618 + Rru_A3415 0.57 +0.0
3,931,618 + Rru_A3415 0.57 +0.0
3,931,619 - Rru_A3415 0.57 +0.0
3,931,742 + Rru_A3415 0.71 +0.0
3,931,743 - Rru_A3415 0.71 +0.0
3,931,743 - Rru_A3415 0.71 +0.0
3,931,863 + Rru_A3415 0.85 +0.0
3,931,863 + Rru_A3415 0.85 +0.0
3,931,864 - Rru_A3415 0.85 +0.0
3,931,864 - Rru_A3415 0.85 -0.9
3,931,864 - Rru_A3415 0.85 +0.0
3,931,864 - Rru_A3415 0.85 +0.0
3,931,864 - Rru_A3415 0.85 +0.0
3,931,865 + Rru_A3415 0.85 +0.0
3,931,866 - Rru_A3415 0.85 +0.0
3,931,866 - Rru_A3415 0.85 -1.2
3,931,923 - +0.0
3,931,955 + +0.0
3,931,955 + +0.0
3,931,956 - -1.2
3,931,988 + +0.0
3,931,988 + +0.0
3,931,988 + -1.2
3,931,988 + -1.0
3,931,989 - +0.0
3,931,989 - +0.0
3,932,109 - Rru_A3416 0.10 +0.0
3,932,109 - Rru_A3416 0.10 +0.0
3,932,109 - Rru_A3416 0.10 +0.0
3,932,335 - Rru_A3416 0.36 +0.0
3,932,335 - Rru_A3416 0.36 +0.0
3,932,555 + Rru_A3416 0.61 +0.0
3,932,555 + Rru_A3416 0.61 +0.0
3,932,555 + Rru_A3416 0.61 -1.2
3,932,556 - Rru_A3416 0.61 +0.0
3,932,556 - Rru_A3416 0.61 -1.1
3,932,651 + Rru_A3416 0.72 +0.0
3,932,651 + Rru_A3416 0.72 +0.0
3,932,651 + Rru_A3416 0.72 +0.0
3,932,651 + Rru_A3416 0.72 -0.7
3,932,652 - Rru_A3416 0.72 +0.0
3,932,652 - Rru_A3416 0.72 -1.2
3,932,652 - Rru_A3416 0.72 +0.0
3,932,652 - Rru_A3416 0.72 +0.0
3,932,652 - Rru_A3416 0.72 -1.2
3,932,652 - Rru_A3416 0.72 +0.0
3,932,652 - Rru_A3416 0.72 +0.0
3,932,872 - +0.0
3,932,879 + -1.1
3,932,879 + +0.0
3,932,879 + -1.3
3,932,954 + +0.0
3,932,955 - +0.0
3,932,955 - -1.3

Or see this region's nucleotide sequence