Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3356

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3354 and Rru_A3355 overlap by 4 nucleotidesRru_A3355 and Rru_A3356 are separated by 52 nucleotidesRru_A3356 and Rru_A3357 are separated by 218 nucleotides Rru_A3354: Rru_A3354 - Protein of unknown function DUF45 (NCBI), at 3,866,971 to 3,867,768 _A3354 Rru_A3355: Rru_A3355 - Uncharacterized conserved protein UCP006173 (NCBI), at 3,867,765 to 3,868,163 _A3355 Rru_A3356: Rru_A3356 - Polyhydroxyalkanoate depolymerase (NCBI), at 3,868,216 to 3,869,472 _A3356 Rru_A3357: Rru_A3357 - Transcriptional Regulator, AraC family (NCBI), at 3,869,691 to 3,871,151 _A3357 Position (kb) 3868 3869 3870Strain fitness (log2 ratio) -2 -1 0 1at 3867.496 kb on - strand, within Rru_A3354at 3867.667 kb on - strand, within Rru_A3354at 3867.790 kb on + strandat 3867.790 kb on + strandat 3867.791 kb on - strandat 3867.791 kb on - strandat 3867.791 kb on - strandat 3867.791 kb on - strandat 3867.791 kb on - strandat 3867.791 kb on - strandat 3867.791 kb on - strandat 3867.928 kb on + strand, within Rru_A3355at 3868.018 kb on + strand, within Rru_A3355at 3868.019 kb on - strand, within Rru_A3355at 3868.037 kb on + strand, within Rru_A3355at 3868.037 kb on + strand, within Rru_A3355at 3868.037 kb on + strand, within Rru_A3355at 3868.038 kb on - strand, within Rru_A3355at 3868.038 kb on - strand, within Rru_A3355at 3868.038 kb on - strand, within Rru_A3355at 3868.325 kb on + strandat 3868.326 kb on - strandat 3868.556 kb on + strand, within Rru_A3356at 3868.556 kb on + strand, within Rru_A3356at 3868.589 kb on + strand, within Rru_A3356at 3868.589 kb on + strand, within Rru_A3356at 3868.589 kb on + strand, within Rru_A3356at 3868.589 kb on + strand, within Rru_A3356at 3868.589 kb on + strand, within Rru_A3356at 3868.589 kb on + strand, within Rru_A3356at 3868.589 kb on + strand, within Rru_A3356at 3868.589 kb on + strand, within Rru_A3356at 3868.598 kb on + strand, within Rru_A3356at 3868.655 kb on + strand, within Rru_A3356at 3869.009 kb on + strand, within Rru_A3356at 3869.009 kb on + strand, within Rru_A3356at 3869.009 kb on + strand, within Rru_A3356at 3869.009 kb on + strand, within Rru_A3356at 3869.009 kb on + strand, within Rru_A3356at 3869.009 kb on + strand, within Rru_A3356at 3869.009 kb on + strand, within Rru_A3356at 3869.009 kb on + strand, within Rru_A3356at 3869.009 kb on + strand, within Rru_A3356at 3869.010 kb on - strand, within Rru_A3356at 3869.010 kb on - strand, within Rru_A3356at 3869.010 kb on - strand, within Rru_A3356at 3869.010 kb on - strand, within Rru_A3356at 3869.010 kb on - strand, within Rru_A3356at 3869.073 kb on + strand, within Rru_A3356at 3869.075 kb on + strand, within Rru_A3356at 3869.075 kb on + strand, within Rru_A3356at 3869.075 kb on + strand, within Rru_A3356at 3869.075 kb on + strand, within Rru_A3356at 3869.076 kb on - strand, within Rru_A3356at 3869.076 kb on - strand, within Rru_A3356at 3869.076 kb on - strand, within Rru_A3356at 3869.076 kb on - strand, within Rru_A3356at 3869.076 kb on - strand, within Rru_A3356at 3869.076 kb on - strand, within Rru_A3356at 3869.076 kb on - strand, within Rru_A3356at 3869.303 kb on + strand, within Rru_A3356at 3869.303 kb on + strand, within Rru_A3356at 3869.364 kb on + strandat 3869.365 kb on - strandat 3869.366 kb on + strandat 3869.366 kb on + strandat 3869.366 kb on + strandat 3869.367 kb on - strandat 3869.367 kb on - strandat 3869.367 kb on - strandat 3869.367 kb on - strandat 3869.393 kb on + strandat 3869.394 kb on - strandat 3869.394 kb on - strandat 3869.394 kb on - strandat 3869.394 kb on - strandat 3869.394 kb on - strandat 3869.463 kb on + strandat 3869.463 kb on + strandat 3869.464 kb on - strandat 3869.506 kb on + strandat 3869.507 kb on - strandat 3869.559 kb on + strandat 3869.559 kb on + strandat 3870.193 kb on - strand, within Rru_A3357at 3870.234 kb on + strand, within Rru_A3357at 3870.402 kb on + strand, within Rru_A3357at 3870.402 kb on + strand, within Rru_A3357at 3870.402 kb on + strand, within Rru_A3357at 3870.402 kb on + strand, within Rru_A3357at 3870.402 kb on + strand, within Rru_A3357at 3870.402 kb on + strand, within Rru_A3357at 3870.403 kb on - strand, within Rru_A3357at 3870.403 kb on - strand, within Rru_A3357at 3870.403 kb on - strand, within Rru_A3357at 3870.403 kb on - strand, within Rru_A3357at 3870.403 kb on - strand, within Rru_A3357at 3870.403 kb on - strand, within Rru_A3357at 3870.403 kb on - strand, within Rru_A3357

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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3,867,496 - Rru_A3354 0.66 +0.0
3,867,667 - Rru_A3354 0.87 +0.0
3,867,790 + +0.0
3,867,790 + +0.0
3,867,791 - -1.1
3,867,791 - -0.8
3,867,791 - +0.0
3,867,791 - +0.0
3,867,791 - -1.3
3,867,791 - +0.0
3,867,791 - +0.0
3,867,928 + Rru_A3355 0.41 +0.0
3,868,018 + Rru_A3355 0.63 +0.0
3,868,019 - Rru_A3355 0.64 +0.0
3,868,037 + Rru_A3355 0.68 +0.0
3,868,037 + Rru_A3355 0.68 +0.0
3,868,037 + Rru_A3355 0.68 +0.0
3,868,038 - Rru_A3355 0.68 +0.0
3,868,038 - Rru_A3355 0.68 +0.0
3,868,038 - Rru_A3355 0.68 -1.5
3,868,325 + +0.0
3,868,326 - +0.0
3,868,556 + Rru_A3356 0.27 +0.0
3,868,556 + Rru_A3356 0.27 +0.0
3,868,589 + Rru_A3356 0.30 +0.0
3,868,589 + Rru_A3356 0.30 +0.0
3,868,589 + Rru_A3356 0.30 +0.0
3,868,589 + Rru_A3356 0.30 -1.8
3,868,589 + Rru_A3356 0.30 +0.0
3,868,589 + Rru_A3356 0.30 +0.0
3,868,589 + Rru_A3356 0.30 +0.0
3,868,589 + Rru_A3356 0.30 -1.0
3,868,598 + Rru_A3356 0.30 +0.0
3,868,655 + Rru_A3356 0.35 +0.0
3,869,009 + Rru_A3356 0.63 +0.0
3,869,009 + Rru_A3356 0.63 +0.0
3,869,009 + Rru_A3356 0.63 +0.0
3,869,009 + Rru_A3356 0.63 +0.0
3,869,009 + Rru_A3356 0.63 +0.0
3,869,009 + Rru_A3356 0.63 +0.0
3,869,009 + Rru_A3356 0.63 +0.0
3,869,009 + Rru_A3356 0.63 +0.0
3,869,009 + Rru_A3356 0.63 +0.0
3,869,010 - Rru_A3356 0.63 -2.3
3,869,010 - Rru_A3356 0.63 -1.6
3,869,010 - Rru_A3356 0.63 +0.0
3,869,010 - Rru_A3356 0.63 -1.2
3,869,010 - Rru_A3356 0.63 +0.0
3,869,073 + Rru_A3356 0.68 +0.0
3,869,075 + Rru_A3356 0.68 +0.0
3,869,075 + Rru_A3356 0.68 +0.0
3,869,075 + Rru_A3356 0.68 +0.0
3,869,075 + Rru_A3356 0.68 +0.0
3,869,076 - Rru_A3356 0.68 +0.0
3,869,076 - Rru_A3356 0.68 +0.0
3,869,076 - Rru_A3356 0.68 +0.0
3,869,076 - Rru_A3356 0.68 -1.4
3,869,076 - Rru_A3356 0.68 +0.0
3,869,076 - Rru_A3356 0.68 +0.0
3,869,076 - Rru_A3356 0.68 -1.0
3,869,303 + Rru_A3356 0.86 +0.0
3,869,303 + Rru_A3356 0.86 -1.2
3,869,364 + +0.0
3,869,365 - +0.0
3,869,366 + -1.2
3,869,366 + -1.5
3,869,366 + +0.0
3,869,367 - -1.0
3,869,367 - -1.2
3,869,367 - +0.0
3,869,367 - -1.2
3,869,393 + +0.0
3,869,394 - -1.2
3,869,394 - -2.0
3,869,394 - +0.0
3,869,394 - -1.1
3,869,394 - +0.0
3,869,463 + +0.0
3,869,463 + -1.0
3,869,464 - -1.3
3,869,506 + -1.0
3,869,507 - -1.5
3,869,559 + +0.0
3,869,559 + -1.0
3,870,193 - Rru_A3357 0.34 +0.0
3,870,234 + Rru_A3357 0.37 +0.0
3,870,402 + Rru_A3357 0.49 +0.0
3,870,402 + Rru_A3357 0.49 -1.2
3,870,402 + Rru_A3357 0.49 +0.0
3,870,402 + Rru_A3357 0.49 +0.0
3,870,402 + Rru_A3357 0.49 -1.2
3,870,402 + Rru_A3357 0.49 -1.0
3,870,403 - Rru_A3357 0.49 -1.0
3,870,403 - Rru_A3357 0.49 +0.0
3,870,403 - Rru_A3357 0.49 +0.0
3,870,403 - Rru_A3357 0.49 +0.0
3,870,403 - Rru_A3357 0.49 +0.0
3,870,403 - Rru_A3357 0.49 +0.0
3,870,403 - Rru_A3357 0.49 +0.0

Or see this region's nucleotide sequence