Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3113

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3112 and Rru_A3113 are separated by 10 nucleotidesRru_A3113 and Rru_A3114 overlap by 4 nucleotidesRru_A3114 and Rru_A3115 are separated by 48 nucleotides Rru_A3112: Rru_A3112 - 4-cresol dehydrogenase (hydroxylating) (NCBI), at 3,588,701 to 3,590,299 _A3112 Rru_A3113: Rru_A3113 - hypothetical protein (NCBI), at 3,590,310 to 3,591,347 _A3113 Rru_A3114: Rru_A3114 - Polysaccharide deacetylase (NCBI), at 3,591,344 to 3,592,261 _A3114 Rru_A3115: Rru_A3115 - ATPase (NCBI), at 3,592,310 to 3,593,335 _A3115 Position (kb) 3590 3591 3592Strain fitness (log2 ratio) -1 0 1at 3589.334 kb on + strand, within Rru_A3112at 3589.822 kb on + strand, within Rru_A3112at 3589.823 kb on - strand, within Rru_A3112at 3589.825 kb on - strand, within Rru_A3112at 3589.825 kb on - strand, within Rru_A3112at 3589.846 kb on + strand, within Rru_A3112at 3589.847 kb on - strand, within Rru_A3112at 3590.085 kb on + strand, within Rru_A3112at 3590.299 kb on + strandat 3590.299 kb on + strandat 3590.299 kb on + strandat 3590.396 kb on - strandat 3590.449 kb on + strand, within Rru_A3113at 3590.450 kb on - strand, within Rru_A3113at 3590.450 kb on - strand, within Rru_A3113at 3590.579 kb on - strand, within Rru_A3113at 3590.581 kb on + strand, within Rru_A3113at 3590.581 kb on + strand, within Rru_A3113at 3590.581 kb on + strand, within Rru_A3113at 3590.581 kb on + strand, within Rru_A3113at 3590.581 kb on + strand, within Rru_A3113at 3590.581 kb on + strand, within Rru_A3113at 3590.581 kb on + strand, within Rru_A3113at 3590.582 kb on - strand, within Rru_A3113at 3590.630 kb on + strand, within Rru_A3113at 3590.630 kb on + strand, within Rru_A3113at 3590.631 kb on - strand, within Rru_A3113at 3590.632 kb on + strand, within Rru_A3113at 3590.632 kb on + strand, within Rru_A3113at 3590.633 kb on - strand, within Rru_A3113at 3590.633 kb on - strand, within Rru_A3113at 3590.636 kb on - strand, within Rru_A3113at 3590.705 kb on + strand, within Rru_A3113at 3590.707 kb on + strand, within Rru_A3113at 3590.751 kb on + strand, within Rru_A3113at 3590.751 kb on + strand, within Rru_A3113at 3590.751 kb on + strand, within Rru_A3113at 3590.751 kb on + strand, within Rru_A3113at 3590.751 kb on + strand, within Rru_A3113at 3590.752 kb on - strand, within Rru_A3113at 3590.753 kb on + strand, within Rru_A3113at 3590.753 kb on + strand, within Rru_A3113at 3590.753 kb on + strand, within Rru_A3113at 3590.753 kb on + strand, within Rru_A3113at 3590.754 kb on - strand, within Rru_A3113at 3590.754 kb on - strand, within Rru_A3113at 3590.754 kb on - strand, within Rru_A3113at 3590.754 kb on - strand, within Rru_A3113at 3590.754 kb on - strand, within Rru_A3113at 3590.754 kb on - strand, within Rru_A3113at 3590.754 kb on - strand, within Rru_A3113at 3590.755 kb on + strand, within Rru_A3113at 3590.756 kb on - strand, within Rru_A3113at 3590.804 kb on - strand, within Rru_A3113at 3590.805 kb on + strand, within Rru_A3113at 3590.805 kb on + strand, within Rru_A3113at 3590.806 kb on - strand, within Rru_A3113at 3590.806 kb on - strand, within Rru_A3113at 3590.806 kb on - strand, within Rru_A3113at 3590.813 kb on - strand, within Rru_A3113at 3590.950 kb on + strand, within Rru_A3113at 3590.951 kb on - strand, within Rru_A3113at 3590.951 kb on - strand, within Rru_A3113at 3591.018 kb on - strand, within Rru_A3113at 3591.019 kb on + strand, within Rru_A3113at 3591.019 kb on + strand, within Rru_A3113at 3591.020 kb on - strand, within Rru_A3113at 3591.020 kb on - strand, within Rru_A3113at 3591.160 kb on + strand, within Rru_A3113at 3591.160 kb on + strand, within Rru_A3113at 3591.160 kb on + strand, within Rru_A3113at 3591.160 kb on + strand, within Rru_A3113at 3591.160 kb on + strand, within Rru_A3113at 3591.160 kb on + strand, within Rru_A3113at 3591.161 kb on - strand, within Rru_A3113at 3591.161 kb on - strand, within Rru_A3113at 3591.161 kb on - strand, within Rru_A3113at 3591.161 kb on - strand, within Rru_A3113at 3591.489 kb on + strand, within Rru_A3114at 3591.489 kb on + strand, within Rru_A3114at 3591.489 kb on + strand, within Rru_A3114at 3591.489 kb on + strand, within Rru_A3114at 3591.489 kb on + strand, within Rru_A3114at 3591.489 kb on + strand, within Rru_A3114at 3591.489 kb on + strand, within Rru_A3114at 3591.490 kb on - strand, within Rru_A3114at 3591.564 kb on + strand, within Rru_A3114at 3591.564 kb on + strand, within Rru_A3114at 3591.564 kb on + strand, within Rru_A3114at 3591.565 kb on - strand, within Rru_A3114at 3591.565 kb on - strand, within Rru_A3114at 3591.565 kb on - strand, within Rru_A3114at 3591.766 kb on - strand, within Rru_A3114at 3591.766 kb on - strand, within Rru_A3114at 3591.799 kb on + strand, within Rru_A3114at 3591.800 kb on - strand, within Rru_A3114at 3591.800 kb on - strand, within Rru_A3114at 3591.800 kb on - strand, within Rru_A3114at 3591.800 kb on - strand, within Rru_A3114at 3591.800 kb on - strand, within Rru_A3114at 3591.800 kb on - strand, within Rru_A3114at 3591.800 kb on - strand, within Rru_A3114at 3591.800 kb on - strand, within Rru_A3114at 3591.800 kb on - strand, within Rru_A3114at 3591.802 kb on - strand, within Rru_A3114at 3591.802 kb on - strand, within Rru_A3114at 3591.802 kb on - strand, within Rru_A3114at 3591.807 kb on + strand, within Rru_A3114at 3591.807 kb on + strand, within Rru_A3114at 3592.299 kb on + strandat 3592.299 kb on + strandat 3592.300 kb on - strandat 3592.300 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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3,589,334 + Rru_A3112 0.40 +0.1
3,589,822 + Rru_A3112 0.70 -0.9
3,589,823 - Rru_A3112 0.70 +0.1
3,589,825 - Rru_A3112 0.70 +0.1
3,589,825 - Rru_A3112 0.70 +0.1
3,589,846 + Rru_A3112 0.72 +0.1
3,589,847 - Rru_A3112 0.72 +0.1
3,590,085 + Rru_A3112 0.87 -1.0
3,590,299 + -1.1
3,590,299 + +0.1
3,590,299 + -1.4
3,590,396 - -1.3
3,590,449 + Rru_A3113 0.13 -0.9
3,590,450 - Rru_A3113 0.13 +0.1
3,590,450 - Rru_A3113 0.13 +0.1
3,590,579 - Rru_A3113 0.26 +0.1
3,590,581 + Rru_A3113 0.26 -1.0
3,590,581 + Rru_A3113 0.26 +0.1
3,590,581 + Rru_A3113 0.26 +0.1
3,590,581 + Rru_A3113 0.26 -1.1
3,590,581 + Rru_A3113 0.26 +0.1
3,590,581 + Rru_A3113 0.26 +0.1
3,590,581 + Rru_A3113 0.26 -0.9
3,590,582 - Rru_A3113 0.26 +0.1
3,590,630 + Rru_A3113 0.31 +0.1
3,590,630 + Rru_A3113 0.31 +0.1
3,590,631 - Rru_A3113 0.31 +0.1
3,590,632 + Rru_A3113 0.31 -0.9
3,590,632 + Rru_A3113 0.31 +0.1
3,590,633 - Rru_A3113 0.31 +0.1
3,590,633 - Rru_A3113 0.31 +0.1
3,590,636 - Rru_A3113 0.31 +0.1
3,590,705 + Rru_A3113 0.38 +0.1
3,590,707 + Rru_A3113 0.38 +0.1
3,590,751 + Rru_A3113 0.42 +0.1
3,590,751 + Rru_A3113 0.42 -1.5
3,590,751 + Rru_A3113 0.42 +0.1
3,590,751 + Rru_A3113 0.42 +0.1
3,590,751 + Rru_A3113 0.42 +0.1
3,590,752 - Rru_A3113 0.43 +0.1
3,590,753 + Rru_A3113 0.43 -0.9
3,590,753 + Rru_A3113 0.43 -0.7
3,590,753 + Rru_A3113 0.43 +0.1
3,590,753 + Rru_A3113 0.43 -1.1
3,590,754 - Rru_A3113 0.43 +0.1
3,590,754 - Rru_A3113 0.43 -0.2
3,590,754 - Rru_A3113 0.43 +0.1
3,590,754 - Rru_A3113 0.43 +0.1
3,590,754 - Rru_A3113 0.43 +1.1
3,590,754 - Rru_A3113 0.43 +0.1
3,590,754 - Rru_A3113 0.43 +0.1
3,590,755 + Rru_A3113 0.43 +0.1
3,590,756 - Rru_A3113 0.43 +0.1
3,590,804 - Rru_A3113 0.48 -1.5
3,590,805 + Rru_A3113 0.48 -1.3
3,590,805 + Rru_A3113 0.48 -0.9
3,590,806 - Rru_A3113 0.48 -0.9
3,590,806 - Rru_A3113 0.48 +0.1
3,590,806 - Rru_A3113 0.48 +0.1
3,590,813 - Rru_A3113 0.48 +0.1
3,590,950 + Rru_A3113 0.62 +0.1
3,590,951 - Rru_A3113 0.62 +0.1
3,590,951 - Rru_A3113 0.62 +0.1
3,591,018 - Rru_A3113 0.68 +0.1
3,591,019 + Rru_A3113 0.68 -1.3
3,591,019 + Rru_A3113 0.68 -1.1
3,591,020 - Rru_A3113 0.68 +0.1
3,591,020 - Rru_A3113 0.68 +0.1
3,591,160 + Rru_A3113 0.82 +0.1
3,591,160 + Rru_A3113 0.82 +0.1
3,591,160 + Rru_A3113 0.82 +0.1
3,591,160 + Rru_A3113 0.82 +0.1
3,591,160 + Rru_A3113 0.82 +0.1
3,591,160 + Rru_A3113 0.82 +0.1
3,591,161 - Rru_A3113 0.82 +0.1
3,591,161 - Rru_A3113 0.82 +0.1
3,591,161 - Rru_A3113 0.82 +0.1
3,591,161 - Rru_A3113 0.82 +0.1
3,591,489 + Rru_A3114 0.16 +0.1
3,591,489 + Rru_A3114 0.16 -0.9
3,591,489 + Rru_A3114 0.16 -0.9
3,591,489 + Rru_A3114 0.16 +0.1
3,591,489 + Rru_A3114 0.16 +0.1
3,591,489 + Rru_A3114 0.16 +0.1
3,591,489 + Rru_A3114 0.16 +0.1
3,591,490 - Rru_A3114 0.16 +0.1
3,591,564 + Rru_A3114 0.24 +0.1
3,591,564 + Rru_A3114 0.24 +0.1
3,591,564 + Rru_A3114 0.24 +0.1
3,591,565 - Rru_A3114 0.24 +0.1
3,591,565 - Rru_A3114 0.24 +0.1
3,591,565 - Rru_A3114 0.24 +0.1
3,591,766 - Rru_A3114 0.46 -0.3
3,591,766 - Rru_A3114 0.46 +0.1
3,591,799 + Rru_A3114 0.50 +0.1
3,591,800 - Rru_A3114 0.50 +0.1
3,591,800 - Rru_A3114 0.50 -0.8
3,591,800 - Rru_A3114 0.50 +0.1
3,591,800 - Rru_A3114 0.50 +0.1
3,591,800 - Rru_A3114 0.50 -1.3
3,591,800 - Rru_A3114 0.50 -1.1
3,591,800 - Rru_A3114 0.50 -1.0
3,591,800 - Rru_A3114 0.50 +0.1
3,591,800 - Rru_A3114 0.50 +0.1
3,591,802 - Rru_A3114 0.50 +0.1
3,591,802 - Rru_A3114 0.50 -1.1
3,591,802 - Rru_A3114 0.50 +0.1
3,591,807 + Rru_A3114 0.50 +0.1
3,591,807 + Rru_A3114 0.50 +0.1
3,592,299 + -1.4
3,592,299 + -1.2
3,592,300 - +0.1
3,592,300 - +0.1

Or see this region's nucleotide sequence