Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2979

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2978 and Rru_A2979 overlap by 4 nucleotidesRru_A2979 and Rru_A2980 are separated by 103 nucleotides Rru_A2978: Rru_A2978 - Chlorophyllide reductase subunit Z (NCBI), at 3,428,559 to 3,430,001 _A2978 Rru_A2979: Rru_A2979 - Chlorophyllide reductase subunit Y (NCBI), at 3,429,998 to 3,431,404 _A2979 Rru_A2980: Rru_A2980 - Chlorophyllide reductase iron protein subunit X (NCBI), at 3,431,508 to 3,432,476 _A2980 Position (kb) 3429 3430 3431 3432Strain fitness (log2 ratio) -3 -2 -1 0 1at 3429.124 kb on + strand, within Rru_A2978at 3429.124 kb on + strand, within Rru_A2978at 3429.125 kb on - strand, within Rru_A2978at 3429.375 kb on - strand, within Rru_A2978at 3429.375 kb on - strand, within Rru_A2978at 3429.375 kb on - strand, within Rru_A2978at 3429.511 kb on + strand, within Rru_A2978at 3429.527 kb on + strand, within Rru_A2978at 3429.527 kb on + strand, within Rru_A2978at 3429.528 kb on - strand, within Rru_A2978at 3429.543 kb on - strand, within Rru_A2978at 3429.543 kb on - strand, within Rru_A2978at 3429.865 kb on + strandat 3429.865 kb on + strandat 3429.866 kb on - strandat 3429.952 kb on + strandat 3429.952 kb on + strandat 3429.953 kb on - strandat 3429.953 kb on - strandat 3429.953 kb on - strandat 3430.063 kb on + strandat 3430.063 kb on + strandat 3430.085 kb on - strandat 3430.152 kb on + strand, within Rru_A2979at 3430.152 kb on + strand, within Rru_A2979at 3430.153 kb on - strand, within Rru_A2979at 3430.153 kb on - strand, within Rru_A2979at 3430.153 kb on - strand, within Rru_A2979at 3430.347 kb on + strand, within Rru_A2979at 3430.347 kb on + strand, within Rru_A2979at 3430.347 kb on + strand, within Rru_A2979at 3430.348 kb on - strand, within Rru_A2979at 3430.348 kb on - strand, within Rru_A2979at 3430.348 kb on - strand, within Rru_A2979at 3430.623 kb on + strand, within Rru_A2979at 3430.624 kb on - strand, within Rru_A2979at 3430.624 kb on - strand, within Rru_A2979at 3430.624 kb on - strand, within Rru_A2979at 3430.668 kb on + strand, within Rru_A2979at 3430.852 kb on - strand, within Rru_A2979at 3431.292 kb on + strandat 3431.521 kb on + strandat 3431.522 kb on - strandat 3431.522 kb on - strandat 3431.522 kb on - strandat 3431.522 kb on - strandat 3431.747 kb on - strand, within Rru_A2980at 3431.902 kb on + strand, within Rru_A2980at 3431.903 kb on - strand, within Rru_A2980at 3431.903 kb on - strand, within Rru_A2980at 3431.935 kb on + strand, within Rru_A2980at 3431.935 kb on + strand, within Rru_A2980at 3431.935 kb on + strand, within Rru_A2980at 3431.935 kb on + strand, within Rru_A2980at 3431.936 kb on - strand, within Rru_A2980at 3431.936 kb on - strand, within Rru_A2980at 3431.936 kb on - strand, within Rru_A2980at 3431.936 kb on - strand, within Rru_A2980at 3431.936 kb on - strand, within Rru_A2980at 3432.049 kb on + strand, within Rru_A2980at 3432.049 kb on + strand, within Rru_A2980at 3432.049 kb on + strand, within Rru_A2980at 3432.049 kb on + strand, within Rru_A2980at 3432.049 kb on + strand, within Rru_A2980at 3432.049 kb on + strand, within Rru_A2980at 3432.104 kb on + strand, within Rru_A2980at 3432.104 kb on + strand, within Rru_A2980at 3432.104 kb on + strand, within Rru_A2980at 3432.160 kb on + strand, within Rru_A2980at 3432.161 kb on - strand, within Rru_A2980at 3432.161 kb on - strand, within Rru_A2980at 3432.340 kb on + strand, within Rru_A2980at 3432.340 kb on + strand, within Rru_A2980at 3432.340 kb on + strand, within Rru_A2980at 3432.341 kb on - strand, within Rru_A2980at 3432.341 kb on - strand, within Rru_A2980at 3432.341 kb on - strand, within Rru_A2980at 3432.341 kb on - strand, within Rru_A2980at 3432.341 kb on - strand, within Rru_A2980at 3432.341 kb on - strand, within Rru_A2980at 3432.341 kb on - strand, within Rru_A2980at 3432.341 kb on - strand, within Rru_A2980at 3432.388 kb on + strandat 3432.388 kb on + strandat 3432.388 kb on + strandat 3432.388 kb on + strandat 3432.388 kb on + strandat 3432.389 kb on - strandat 3432.389 kb on - strandat 3432.389 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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3,429,124 + Rru_A2978 0.39 -1.4
3,429,124 + Rru_A2978 0.39 +0.0
3,429,125 - Rru_A2978 0.39 +0.0
3,429,375 - Rru_A2978 0.57 -2.3
3,429,375 - Rru_A2978 0.57 +0.0
3,429,375 - Rru_A2978 0.57 +0.0
3,429,511 + Rru_A2978 0.66 -3.2
3,429,527 + Rru_A2978 0.67 -1.0
3,429,527 + Rru_A2978 0.67 -2.8
3,429,528 - Rru_A2978 0.67 +0.0
3,429,543 - Rru_A2978 0.68 -1.3
3,429,543 - Rru_A2978 0.68 +0.0
3,429,865 + +0.0
3,429,865 + -1.0
3,429,866 - +0.0
3,429,952 + -1.0
3,429,952 + +0.0
3,429,953 - +0.0
3,429,953 - +0.0
3,429,953 - -1.0
3,430,063 + +0.0
3,430,063 + +0.0
3,430,085 - +0.0
3,430,152 + Rru_A2979 0.11 +0.0
3,430,152 + Rru_A2979 0.11 +0.0
3,430,153 - Rru_A2979 0.11 -2.7
3,430,153 - Rru_A2979 0.11 +0.0
3,430,153 - Rru_A2979 0.11 +0.0
3,430,347 + Rru_A2979 0.25 +0.0
3,430,347 + Rru_A2979 0.25 -2.0
3,430,347 + Rru_A2979 0.25 +0.0
3,430,348 - Rru_A2979 0.25 +0.0
3,430,348 - Rru_A2979 0.25 -2.3
3,430,348 - Rru_A2979 0.25 -1.2
3,430,623 + Rru_A2979 0.44 +0.0
3,430,624 - Rru_A2979 0.44 +0.0
3,430,624 - Rru_A2979 0.44 +0.0
3,430,624 - Rru_A2979 0.44 -2.0
3,430,668 + Rru_A2979 0.48 -2.6
3,430,852 - Rru_A2979 0.61 -2.5
3,431,292 + +0.0
3,431,521 + +0.0
3,431,522 - -2.9
3,431,522 - +0.0
3,431,522 - +0.0
3,431,522 - +0.0
3,431,747 - Rru_A2980 0.25 +0.0
3,431,902 + Rru_A2980 0.41 +0.0
3,431,903 - Rru_A2980 0.41 -2.8
3,431,903 - Rru_A2980 0.41 -2.7
3,431,935 + Rru_A2980 0.44 +0.0
3,431,935 + Rru_A2980 0.44 -3.0
3,431,935 + Rru_A2980 0.44 -2.9
3,431,935 + Rru_A2980 0.44 +0.0
3,431,936 - Rru_A2980 0.44 +0.0
3,431,936 - Rru_A2980 0.44 -1.0
3,431,936 - Rru_A2980 0.44 +0.0
3,431,936 - Rru_A2980 0.44 +0.0
3,431,936 - Rru_A2980 0.44 +0.0
3,432,049 + Rru_A2980 0.56 +0.0
3,432,049 + Rru_A2980 0.56 -1.0
3,432,049 + Rru_A2980 0.56 +0.0
3,432,049 + Rru_A2980 0.56 -1.6
3,432,049 + Rru_A2980 0.56 +0.0
3,432,049 + Rru_A2980 0.56 +0.0
3,432,104 + Rru_A2980 0.62 +0.0
3,432,104 + Rru_A2980 0.62 +0.0
3,432,104 + Rru_A2980 0.62 +0.0
3,432,160 + Rru_A2980 0.67 -1.0
3,432,161 - Rru_A2980 0.67 +0.0
3,432,161 - Rru_A2980 0.67 +0.0
3,432,340 + Rru_A2980 0.86 +0.0
3,432,340 + Rru_A2980 0.86 +0.0
3,432,340 + Rru_A2980 0.86 +0.0
3,432,341 - Rru_A2980 0.86 +0.0
3,432,341 - Rru_A2980 0.86 +0.0
3,432,341 - Rru_A2980 0.86 -2.5
3,432,341 - Rru_A2980 0.86 -1.5
3,432,341 - Rru_A2980 0.86 +0.0
3,432,341 - Rru_A2980 0.86 +0.0
3,432,341 - Rru_A2980 0.86 +0.0
3,432,341 - Rru_A2980 0.86 -2.6
3,432,388 + +0.0
3,432,388 + -2.9
3,432,388 + +0.0
3,432,388 + +0.0
3,432,388 + +0.0
3,432,389 - +0.0
3,432,389 - +0.0
3,432,389 - +0.0

Or see this region's nucleotide sequence