Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2767

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2765 and Rru_A2766 are separated by 44 nucleotidesRru_A2766 and Rru_A2767 are separated by 350 nucleotidesRru_A2767 and Rru_A2768 overlap by 8 nucleotidesRru_A2768 and Rru_A2769 are separated by 146 nucleotides Rru_A2765: Rru_A2765 - GCN5-related N-acetyltransferase (NCBI), at 3,199,864 to 3,200,985 _A2765 Rru_A2766: Rru_A2766 - Protein of unknown function DUF329 (NCBI), at 3,201,030 to 3,201,266 _A2766 Rru_A2767: Rru_A2767 - ribonuclease G (RNase G) (NCBI), at 3,201,617 to 3,202,999 _A2767 Rru_A2768: Rru_A2768 - Maf-like protein (NCBI), at 3,202,992 to 3,203,624 _A2768 Rru_A2769: Rru_A2769 - Protein tyrosine phosphatase (NCBI), at 3,203,771 to 3,204,220 _A2769 Position (kb) 3201 3202 3203Strain fitness (log2 ratio) -2 -1 0 1at 3200.759 kb on + strand, within Rru_A2765at 3200.759 kb on + strand, within Rru_A2765at 3200.760 kb on - strand, within Rru_A2765at 3201.073 kb on + strand, within Rru_A2766at 3201.074 kb on - strand, within Rru_A2766at 3201.074 kb on - strand, within Rru_A2766at 3201.258 kb on + strandat 3201.259 kb on - strandat 3201.266 kb on + strandat 3201.366 kb on + strandat 3201.367 kb on - strandat 3201.394 kb on + strandat 3201.395 kb on - strandat 3201.409 kb on + strandat 3201.409 kb on + strandat 3201.410 kb on - strandat 3201.436 kb on + strandat 3201.436 kb on + strandat 3201.437 kb on - strandat 3201.437 kb on - strandat 3201.478 kb on - strandat 3201.517 kb on + strandat 3201.518 kb on - strandat 3201.518 kb on - strandat 3202.638 kb on + strand, within Rru_A2767at 3202.638 kb on + strand, within Rru_A2767at 3202.645 kb on + strand, within Rru_A2767at 3202.645 kb on + strand, within Rru_A2767at 3202.646 kb on - strand, within Rru_A2767at 3202.646 kb on - strand, within Rru_A2767at 3202.646 kb on - strand, within Rru_A2767at 3202.646 kb on - strand, within Rru_A2767at 3202.647 kb on + strand, within Rru_A2767at 3202.647 kb on + strand, within Rru_A2767at 3202.647 kb on + strand, within Rru_A2767at 3202.647 kb on + strand, within Rru_A2767at 3202.648 kb on - strand, within Rru_A2767at 3202.648 kb on - strand, within Rru_A2767at 3202.648 kb on - strand, within Rru_A2767at 3202.974 kb on + strandat 3202.974 kb on + strandat 3202.974 kb on + strandat 3202.974 kb on + strandat 3202.975 kb on - strandat 3202.975 kb on - strandat 3203.676 kb on + strandat 3203.694 kb on + strandat 3203.712 kb on + strandat 3203.712 kb on + strandat 3203.712 kb on + strandat 3203.713 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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3,200,759 + Rru_A2765 0.80 -0.1
3,200,759 + Rru_A2765 0.80 -0.7
3,200,760 - Rru_A2765 0.80 -0.9
3,201,073 + Rru_A2766 0.18 -0.1
3,201,074 - Rru_A2766 0.19 -0.1
3,201,074 - Rru_A2766 0.19 -0.1
3,201,258 + -0.1
3,201,259 - -1.1
3,201,266 + -0.1
3,201,366 + -0.9
3,201,367 - -0.1
3,201,394 + -0.1
3,201,395 - -1.6
3,201,409 + -0.7
3,201,409 + -2.1
3,201,410 - -0.1
3,201,436 + -0.1
3,201,436 + -0.5
3,201,437 - -0.1
3,201,437 - -2.6
3,201,478 - -1.2
3,201,517 + -0.1
3,201,518 - +0.4
3,201,518 - -0.9
3,202,638 + Rru_A2767 0.74 -0.1
3,202,638 + Rru_A2767 0.74 -0.1
3,202,645 + Rru_A2767 0.74 -1.1
3,202,645 + Rru_A2767 0.74 -0.7
3,202,646 - Rru_A2767 0.74 -0.1
3,202,646 - Rru_A2767 0.74 -0.1
3,202,646 - Rru_A2767 0.74 -0.2
3,202,646 - Rru_A2767 0.74 -0.1
3,202,647 + Rru_A2767 0.74 -0.1
3,202,647 + Rru_A2767 0.74 -0.1
3,202,647 + Rru_A2767 0.74 -0.9
3,202,647 + Rru_A2767 0.74 -0.1
3,202,648 - Rru_A2767 0.75 -0.5
3,202,648 - Rru_A2767 0.75 -0.1
3,202,648 - Rru_A2767 0.75 -0.3
3,202,974 + -0.1
3,202,974 + -0.1
3,202,974 + -0.1
3,202,974 + -0.1
3,202,975 - -0.1
3,202,975 - -0.1
3,203,676 + -0.1
3,203,694 + -2.4
3,203,712 + -0.1
3,203,712 + -0.1
3,203,712 + -1.4
3,203,713 - -0.1

Or see this region's nucleotide sequence