Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1226

Experiment: L-Malic Acid (C) and N2; high light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1224 and Rru_A1225 are separated by 50 nucleotidesRru_A1225 and Rru_A1226 are separated by 28 nucleotidesRru_A1226 and Rru_A1227 are separated by 140 nucleotidesRru_A1227 and Rru_A1228 are separated by 155 nucleotides Rru_A1224: Rru_A1224 - ATP synthase F1, alpha subunit (NCBI), at 1,445,201 to 1,446,733 _A1224 Rru_A1225: Rru_A1225 - Sodium-transporting two-sector ATPase (NCBI), at 1,446,784 to 1,447,683 _A1225 Rru_A1226: Rru_A1226 - ATP synthase F1, beta subunit (NCBI), at 1,447,712 to 1,449,136 _A1226 Rru_A1227: Rru_A1227 - H+-transporting two-sector ATPase, delta/epsilon subunit (NCBI), at 1,449,277 to 1,449,681 _A1227 Rru_A1228: Rru_A1228 - hypothetical protein (NCBI), at 1,449,837 to 1,450,646 _A1228 Position (kb) 1447 1448 1449 1450Strain fitness (log2 ratio) -2 -1 0 1at 1449.815 kb on - strandat 1449.955 kb on - strand, within Rru_A1228at 1449.963 kb on + strand, within Rru_A1228at 1449.963 kb on + strand, within Rru_A1228at 1449.963 kb on + strand, within Rru_A1228at 1449.963 kb on + strand, within Rru_A1228at 1449.963 kb on + strand, within Rru_A1228at 1449.963 kb on + strand, within Rru_A1228at 1449.964 kb on - strand, within Rru_A1228at 1449.964 kb on - strand, within Rru_A1228at 1449.964 kb on - strand, within Rru_A1228at 1449.964 kb on - strand, within Rru_A1228at 1450.122 kb on + strand, within Rru_A1228at 1450.123 kb on - strand, within Rru_A1228at 1450.124 kb on + strand, within Rru_A1228

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
remove
1,449,815 - -0.1
1,449,955 - Rru_A1228 0.15 -0.1
1,449,963 + Rru_A1228 0.16 -0.1
1,449,963 + Rru_A1228 0.16 -0.1
1,449,963 + Rru_A1228 0.16 -0.1
1,449,963 + Rru_A1228 0.16 -2.1
1,449,963 + Rru_A1228 0.16 -0.5
1,449,963 + Rru_A1228 0.16 -0.1
1,449,964 - Rru_A1228 0.16 -0.1
1,449,964 - Rru_A1228 0.16 -0.1
1,449,964 - Rru_A1228 0.16 -0.8
1,449,964 - Rru_A1228 0.16 -0.1
1,450,122 + Rru_A1228 0.35 -0.6
1,450,123 - Rru_A1228 0.35 -0.1
1,450,124 + Rru_A1228 0.35 -1.7

Or see this region's nucleotide sequence