Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1129

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1128 and Rru_A1129 are separated by 56 nucleotidesRru_A1129 and Rru_A1130 are separated by 213 nucleotides Rru_A1128: Rru_A1128 - Integrase, catalytic region (NCBI), at 1,329,614 to 1,330,456 _A1128 Rru_A1129: Rru_A1129 - Ammonium transporter (NCBI), at 1,330,513 to 1,331,808 _A1129 Rru_A1130: Rru_A1130 - Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI), at 1,332,022 to 1,332,360 _A1130 Position (kb) 1330 1331 1332Strain fitness (log2 ratio) -2 -1 0 1at 1329.630 kb on - strandat 1329.640 kb on + strandat 1329.641 kb on - strandat 1329.754 kb on + strand, within Rru_A1128at 1329.755 kb on - strand, within Rru_A1128at 1329.755 kb on - strand, within Rru_A1128at 1329.755 kb on - strand, within Rru_A1128at 1329.755 kb on - strand, within Rru_A1128at 1329.858 kb on + strand, within Rru_A1128at 1329.858 kb on + strand, within Rru_A1128at 1329.859 kb on - strand, within Rru_A1128at 1329.878 kb on + strand, within Rru_A1128at 1329.887 kb on - strand, within Rru_A1128at 1329.965 kb on + strand, within Rru_A1128at 1329.965 kb on + strand, within Rru_A1128at 1329.965 kb on + strand, within Rru_A1128at 1329.965 kb on + strand, within Rru_A1128at 1329.965 kb on + strand, within Rru_A1128at 1329.966 kb on - strand, within Rru_A1128at 1329.966 kb on - strand, within Rru_A1128at 1329.966 kb on - strand, within Rru_A1128at 1329.966 kb on - strand, within Rru_A1128at 1329.966 kb on - strand, within Rru_A1128at 1330.041 kb on - strand, within Rru_A1128at 1330.072 kb on + strand, within Rru_A1128at 1330.089 kb on + strand, within Rru_A1128at 1330.089 kb on + strand, within Rru_A1128at 1330.090 kb on - strand, within Rru_A1128at 1330.090 kb on - strand, within Rru_A1128at 1330.135 kb on + strand, within Rru_A1128at 1330.135 kb on + strand, within Rru_A1128at 1330.135 kb on + strand, within Rru_A1128at 1330.135 kb on + strand, within Rru_A1128at 1330.135 kb on + strand, within Rru_A1128at 1330.136 kb on - strand, within Rru_A1128at 1330.136 kb on - strand, within Rru_A1128at 1330.260 kb on - strand, within Rru_A1128at 1330.260 kb on - strand, within Rru_A1128at 1330.265 kb on + strand, within Rru_A1128at 1330.265 kb on + strand, within Rru_A1128at 1330.265 kb on + strand, within Rru_A1128at 1330.265 kb on + strand, within Rru_A1128at 1330.266 kb on - strand, within Rru_A1128at 1330.266 kb on - strand, within Rru_A1128at 1330.317 kb on - strand, within Rru_A1128at 1330.317 kb on - strand, within Rru_A1128at 1330.515 kb on - strandat 1330.616 kb on + strandat 1330.616 kb on + strandat 1330.617 kb on - strandat 1330.617 kb on - strandat 1330.617 kb on - strandat 1330.808 kb on + strand, within Rru_A1129at 1331.142 kb on + strand, within Rru_A1129at 1331.143 kb on - strand, within Rru_A1129at 1331.144 kb on + strand, within Rru_A1129at 1331.144 kb on + strand, within Rru_A1129at 1331.144 kb on + strand, within Rru_A1129at 1331.144 kb on + strand, within Rru_A1129at 1331.144 kb on + strand, within Rru_A1129at 1331.145 kb on - strand, within Rru_A1129at 1331.145 kb on - strand, within Rru_A1129at 1331.249 kb on + strand, within Rru_A1129at 1331.315 kb on + strand, within Rru_A1129at 1331.316 kb on - strand, within Rru_A1129at 1331.513 kb on + strand, within Rru_A1129at 1331.514 kb on - strand, within Rru_A1129at 1331.544 kb on - strand, within Rru_A1129at 1331.744 kb on + strandat 1331.744 kb on + strandat 1331.744 kb on + strandat 1331.745 kb on - strandat 1332.024 kb on - strandat 1332.209 kb on + strand, within Rru_A1130at 1332.209 kb on + strand, within Rru_A1130at 1332.209 kb on + strand, within Rru_A1130at 1332.209 kb on + strand, within Rru_A1130at 1332.210 kb on - strand, within Rru_A1130at 1332.210 kb on - strand, within Rru_A1130at 1332.466 kb on + strandat 1332.753 kb on - strandat 1332.753 kb on - strandat 1332.758 kb on + strandat 1332.759 kb on - strandat 1332.759 kb on - strandat 1332.786 kb on + strandat 1332.795 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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1,329,630 - -0.0
1,329,640 + -0.0
1,329,641 - -0.0
1,329,754 + Rru_A1128 0.17 -0.0
1,329,755 - Rru_A1128 0.17 -0.0
1,329,755 - Rru_A1128 0.17 -0.0
1,329,755 - Rru_A1128 0.17 -1.3
1,329,755 - Rru_A1128 0.17 -0.0
1,329,858 + Rru_A1128 0.29 -2.0
1,329,858 + Rru_A1128 0.29 -0.0
1,329,859 - Rru_A1128 0.29 -0.0
1,329,878 + Rru_A1128 0.31 -0.0
1,329,887 - Rru_A1128 0.32 -1.2
1,329,965 + Rru_A1128 0.42 -1.2
1,329,965 + Rru_A1128 0.42 -0.0
1,329,965 + Rru_A1128 0.42 -1.6
1,329,965 + Rru_A1128 0.42 -0.0
1,329,965 + Rru_A1128 0.42 -0.0
1,329,966 - Rru_A1128 0.42 -0.0
1,329,966 - Rru_A1128 0.42 -1.5
1,329,966 - Rru_A1128 0.42 -0.0
1,329,966 - Rru_A1128 0.42 -0.0
1,329,966 - Rru_A1128 0.42 -0.0
1,330,041 - Rru_A1128 0.51 -0.0
1,330,072 + Rru_A1128 0.54 -0.0
1,330,089 + Rru_A1128 0.56 -1.3
1,330,089 + Rru_A1128 0.56 -1.3
1,330,090 - Rru_A1128 0.56 -0.0
1,330,090 - Rru_A1128 0.56 -1.1
1,330,135 + Rru_A1128 0.62 -0.0
1,330,135 + Rru_A1128 0.62 -0.0
1,330,135 + Rru_A1128 0.62 -0.0
1,330,135 + Rru_A1128 0.62 -0.0
1,330,135 + Rru_A1128 0.62 -0.0
1,330,136 - Rru_A1128 0.62 -0.0
1,330,136 - Rru_A1128 0.62 -0.0
1,330,260 - Rru_A1128 0.77 -0.0
1,330,260 - Rru_A1128 0.77 -0.0
1,330,265 + Rru_A1128 0.77 -1.1
1,330,265 + Rru_A1128 0.77 -0.0
1,330,265 + Rru_A1128 0.77 -0.0
1,330,265 + Rru_A1128 0.77 -1.5
1,330,266 - Rru_A1128 0.77 -0.0
1,330,266 - Rru_A1128 0.77 -0.0
1,330,317 - Rru_A1128 0.83 -0.0
1,330,317 - Rru_A1128 0.83 -0.0
1,330,515 - -0.0
1,330,616 + -0.0
1,330,616 + -0.0
1,330,617 - -0.0
1,330,617 - -1.9
1,330,617 - -1.8
1,330,808 + Rru_A1129 0.23 -0.0
1,331,142 + Rru_A1129 0.49 -0.0
1,331,143 - Rru_A1129 0.49 -2.0
1,331,144 + Rru_A1129 0.49 -2.0
1,331,144 + Rru_A1129 0.49 -1.0
1,331,144 + Rru_A1129 0.49 -2.0
1,331,144 + Rru_A1129 0.49 -2.1
1,331,144 + Rru_A1129 0.49 -2.1
1,331,145 - Rru_A1129 0.49 -0.0
1,331,145 - Rru_A1129 0.49 -0.0
1,331,249 + Rru_A1129 0.57 -1.9
1,331,315 + Rru_A1129 0.62 -0.0
1,331,316 - Rru_A1129 0.62 -0.0
1,331,513 + Rru_A1129 0.77 -2.2
1,331,514 - Rru_A1129 0.77 -0.0
1,331,544 - Rru_A1129 0.80 -0.0
1,331,744 + -0.0
1,331,744 + -0.0
1,331,744 + -2.1
1,331,745 - -0.0
1,332,024 - -1.0
1,332,209 + Rru_A1130 0.55 -0.0
1,332,209 + Rru_A1130 0.55 -0.0
1,332,209 + Rru_A1130 0.55 -1.5
1,332,209 + Rru_A1130 0.55 -0.0
1,332,210 - Rru_A1130 0.55 -0.0
1,332,210 - Rru_A1130 0.55 -1.1
1,332,466 + -0.0
1,332,753 - -1.3
1,332,753 - -0.0
1,332,758 + -2.2
1,332,759 - -0.0
1,332,759 - -1.0
1,332,786 + -1.4
1,332,795 - -0.0

Or see this region's nucleotide sequence