Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0881

Experiment: L-Malic Acid (C) and N2; high light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0880 and Rru_A0881 are separated by 44 nucleotidesRru_A0881 and Rru_A0882 overlap by 4 nucleotides Rru_A0880: Rru_A0880 - TonB-dependent receptor (NCBI), at 1,051,001 to 1,053,043 _A0880 Rru_A0881: Rru_A0881 - ABC transporter component (NCBI), at 1,053,088 to 1,054,857 _A0881 Rru_A0882: Rru_A0882 - ABC transporter, transmembrane region (NCBI), at 1,054,854 to 1,056,632 _A0882 Position (kb) 1053 1054 1055Strain fitness (log2 ratio) -2 -1 0 1 2at 1052.120 kb on + strand, within Rru_A0880at 1052.192 kb on + strand, within Rru_A0880at 1052.197 kb on + strand, within Rru_A0880at 1052.197 kb on + strand, within Rru_A0880at 1052.351 kb on + strand, within Rru_A0880at 1052.352 kb on - strand, within Rru_A0880at 1052.352 kb on - strand, within Rru_A0880at 1052.352 kb on - strand, within Rru_A0880at 1052.352 kb on - strand, within Rru_A0880at 1052.353 kb on + strand, within Rru_A0880at 1052.353 kb on + strand, within Rru_A0880at 1052.429 kb on + strand, within Rru_A0880at 1052.430 kb on - strand, within Rru_A0880at 1052.430 kb on - strand, within Rru_A0880at 1052.469 kb on + strand, within Rru_A0880at 1052.519 kb on + strand, within Rru_A0880at 1052.519 kb on + strand, within Rru_A0880at 1052.520 kb on - strand, within Rru_A0880at 1052.520 kb on - strand, within Rru_A0880at 1052.520 kb on - strand, within Rru_A0880at 1052.582 kb on + strand, within Rru_A0880at 1052.582 kb on + strand, within Rru_A0880at 1052.583 kb on - strand, within Rru_A0880at 1052.583 kb on - strand, within Rru_A0880at 1052.583 kb on - strand, within Rru_A0880at 1052.668 kb on - strand, within Rru_A0880at 1052.668 kb on - strand, within Rru_A0880at 1052.668 kb on - strand, within Rru_A0880at 1052.699 kb on + strand, within Rru_A0880at 1052.699 kb on + strand, within Rru_A0880at 1052.699 kb on + strand, within Rru_A0880at 1052.700 kb on - strand, within Rru_A0880at 1052.700 kb on - strand, within Rru_A0880at 1052.700 kb on - strand, within Rru_A0880at 1052.700 kb on - strand, within Rru_A0880at 1052.720 kb on + strand, within Rru_A0880at 1052.721 kb on - strand, within Rru_A0880at 1052.733 kb on - strand, within Rru_A0880at 1052.756 kb on + strand, within Rru_A0880at 1052.756 kb on + strand, within Rru_A0880at 1052.756 kb on + strand, within Rru_A0880at 1052.757 kb on - strand, within Rru_A0880at 1052.757 kb on - strand, within Rru_A0880at 1052.757 kb on - strand, within Rru_A0880at 1052.759 kb on - strand, within Rru_A0880at 1052.759 kb on - strand, within Rru_A0880at 1052.759 kb on - strand, within Rru_A0880at 1052.759 kb on - strand, within Rru_A0880at 1052.813 kb on + strand, within Rru_A0880at 1052.814 kb on - strand, within Rru_A0880at 1052.846 kb on - strandat 1052.960 kb on + strandat 1052.960 kb on + strandat 1052.966 kb on + strandat 1052.966 kb on + strandat 1052.966 kb on + strandat 1052.987 kb on + strandat 1052.987 kb on + strandat 1052.987 kb on + strandat 1052.988 kb on - strandat 1052.988 kb on - strandat 1052.988 kb on - strandat 1052.988 kb on - strandat 1052.988 kb on - strandat 1052.989 kb on + strandat 1052.990 kb on - strandat 1053.258 kb on + strandat 1053.418 kb on - strand, within Rru_A0881at 1053.486 kb on + strand, within Rru_A0881at 1053.486 kb on + strand, within Rru_A0881at 1053.487 kb on - strand, within Rru_A0881at 1053.504 kb on + strand, within Rru_A0881at 1053.803 kb on - strand, within Rru_A0881at 1053.832 kb on + strand, within Rru_A0881at 1053.832 kb on + strand, within Rru_A0881at 1053.833 kb on - strand, within Rru_A0881at 1053.889 kb on + strand, within Rru_A0881at 1053.889 kb on + strand, within Rru_A0881at 1053.889 kb on + strand, within Rru_A0881at 1053.889 kb on + strand, within Rru_A0881at 1053.889 kb on + strand, within Rru_A0881at 1053.890 kb on - strand, within Rru_A0881at 1053.891 kb on + strand, within Rru_A0881at 1053.903 kb on + strand, within Rru_A0881at 1053.904 kb on - strand, within Rru_A0881at 1053.904 kb on - strand, within Rru_A0881at 1053.979 kb on + strand, within Rru_A0881at 1053.979 kb on + strand, within Rru_A0881at 1053.980 kb on - strand, within Rru_A0881at 1053.980 kb on - strand, within Rru_A0881at 1054.285 kb on - strand, within Rru_A0881at 1054.302 kb on - strand, within Rru_A0881at 1054.380 kb on + strand, within Rru_A0881at 1054.480 kb on + strand, within Rru_A0881at 1054.480 kb on + strand, within Rru_A0881at 1054.481 kb on - strand, within Rru_A0881at 1054.481 kb on - strand, within Rru_A0881at 1054.787 kb on - strandat 1054.848 kb on + strandat 1054.916 kb on + strandat 1054.917 kb on - strandat 1054.917 kb on - strandat 1054.917 kb on - strandat 1054.959 kb on + strandat 1055.082 kb on + strand, within Rru_A0882at 1055.139 kb on + strand, within Rru_A0882at 1055.139 kb on + strand, within Rru_A0882at 1055.282 kb on + strand, within Rru_A0882at 1055.282 kb on + strand, within Rru_A0882at 1055.282 kb on + strand, within Rru_A0882at 1055.283 kb on - strand, within Rru_A0882at 1055.283 kb on - strand, within Rru_A0882at 1055.601 kb on + strand, within Rru_A0882at 1055.601 kb on + strand, within Rru_A0882at 1055.602 kb on - strand, within Rru_A0882at 1055.602 kb on - strand, within Rru_A0882at 1055.602 kb on - strand, within Rru_A0882at 1055.602 kb on - strand, within Rru_A0882

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
remove
1,052,120 + Rru_A0880 0.55 -1.0
1,052,192 + Rru_A0880 0.58 +0.0
1,052,197 + Rru_A0880 0.59 +0.0
1,052,197 + Rru_A0880 0.59 +0.0
1,052,351 + Rru_A0880 0.66 -1.0
1,052,352 - Rru_A0880 0.66 +0.0
1,052,352 - Rru_A0880 0.66 +0.0
1,052,352 - Rru_A0880 0.66 -1.1
1,052,352 - Rru_A0880 0.66 -1.0
1,052,353 + Rru_A0880 0.66 +0.0
1,052,353 + Rru_A0880 0.66 +0.0
1,052,429 + Rru_A0880 0.70 +0.0
1,052,430 - Rru_A0880 0.70 +0.0
1,052,430 - Rru_A0880 0.70 +0.0
1,052,469 + Rru_A0880 0.72 +0.0
1,052,519 + Rru_A0880 0.74 +0.0
1,052,519 + Rru_A0880 0.74 -1.1
1,052,520 - Rru_A0880 0.74 +0.0
1,052,520 - Rru_A0880 0.74 -1.6
1,052,520 - Rru_A0880 0.74 +0.0
1,052,582 + Rru_A0880 0.77 +0.0
1,052,582 + Rru_A0880 0.77 -1.0
1,052,583 - Rru_A0880 0.77 +0.0
1,052,583 - Rru_A0880 0.77 +0.0
1,052,583 - Rru_A0880 0.77 +0.0
1,052,668 - Rru_A0880 0.82 +0.0
1,052,668 - Rru_A0880 0.82 +0.0
1,052,668 - Rru_A0880 0.82 +0.0
1,052,699 + Rru_A0880 0.83 -1.2
1,052,699 + Rru_A0880 0.83 -1.0
1,052,699 + Rru_A0880 0.83 -1.3
1,052,700 - Rru_A0880 0.83 -1.1
1,052,700 - Rru_A0880 0.83 -1.1
1,052,700 - Rru_A0880 0.83 +0.0
1,052,700 - Rru_A0880 0.83 +0.0
1,052,720 + Rru_A0880 0.84 +0.0
1,052,721 - Rru_A0880 0.84 +0.0
1,052,733 - Rru_A0880 0.85 -1.0
1,052,756 + Rru_A0880 0.86 +0.0
1,052,756 + Rru_A0880 0.86 +0.0
1,052,756 + Rru_A0880 0.86 +0.0
1,052,757 - Rru_A0880 0.86 +0.0
1,052,757 - Rru_A0880 0.86 -1.1
1,052,757 - Rru_A0880 0.86 -1.0
1,052,759 - Rru_A0880 0.86 -1.3
1,052,759 - Rru_A0880 0.86 +0.0
1,052,759 - Rru_A0880 0.86 +0.0
1,052,759 - Rru_A0880 0.86 -1.6
1,052,813 + Rru_A0880 0.89 +0.0
1,052,814 - Rru_A0880 0.89 +0.0
1,052,846 - -1.0
1,052,960 + -1.1
1,052,960 + +0.0
1,052,966 + +0.0
1,052,966 + +0.0
1,052,966 + -1.2
1,052,987 + -1.2
1,052,987 + +0.0
1,052,987 + +0.0
1,052,988 - +0.0
1,052,988 - +0.0
1,052,988 - +0.0
1,052,988 - -1.2
1,052,988 - +0.0
1,052,989 + +0.0
1,052,990 - +0.0
1,053,258 + +0.0
1,053,418 - Rru_A0881 0.19 +0.0
1,053,486 + Rru_A0881 0.22 +0.0
1,053,486 + Rru_A0881 0.22 +0.0
1,053,487 - Rru_A0881 0.23 +0.0
1,053,504 + Rru_A0881 0.24 +2.0
1,053,803 - Rru_A0881 0.40 -0.5
1,053,832 + Rru_A0881 0.42 -1.1
1,053,832 + Rru_A0881 0.42 -1.0
1,053,833 - Rru_A0881 0.42 +0.0
1,053,889 + Rru_A0881 0.45 +0.0
1,053,889 + Rru_A0881 0.45 +0.0
1,053,889 + Rru_A0881 0.45 +0.0
1,053,889 + Rru_A0881 0.45 -0.9
1,053,889 + Rru_A0881 0.45 +0.0
1,053,890 - Rru_A0881 0.45 +0.0
1,053,891 + Rru_A0881 0.45 +0.0
1,053,903 + Rru_A0881 0.46 +0.0
1,053,904 - Rru_A0881 0.46 +0.0
1,053,904 - Rru_A0881 0.46 +0.0
1,053,979 + Rru_A0881 0.50 +0.0
1,053,979 + Rru_A0881 0.50 +0.0
1,053,980 - Rru_A0881 0.50 -0.8
1,053,980 - Rru_A0881 0.50 +0.0
1,054,285 - Rru_A0881 0.68 -1.4
1,054,302 - Rru_A0881 0.69 +0.0
1,054,380 + Rru_A0881 0.73 +0.0
1,054,480 + Rru_A0881 0.79 +0.0
1,054,480 + Rru_A0881 0.79 +0.0
1,054,481 - Rru_A0881 0.79 +0.0
1,054,481 - Rru_A0881 0.79 -1.0
1,054,787 - +0.0
1,054,848 + +0.0
1,054,916 + -1.2
1,054,917 - +0.0
1,054,917 - -1.4
1,054,917 - -1.2
1,054,959 + +0.0
1,055,082 + Rru_A0882 0.13 +0.0
1,055,139 + Rru_A0882 0.16 -2.0
1,055,139 + Rru_A0882 0.16 +0.0
1,055,282 + Rru_A0882 0.24 +0.0
1,055,282 + Rru_A0882 0.24 +0.0
1,055,282 + Rru_A0882 0.24 +0.0
1,055,283 - Rru_A0882 0.24 +0.0
1,055,283 - Rru_A0882 0.24 +0.0
1,055,601 + Rru_A0882 0.42 +0.0
1,055,601 + Rru_A0882 0.42 +0.0
1,055,602 - Rru_A0882 0.42 +0.0
1,055,602 - Rru_A0882 0.42 -1.0
1,055,602 - Rru_A0882 0.42 +0.0
1,055,602 - Rru_A0882 0.42 -1.3

Or see this region's nucleotide sequence