Experiment: L-Malic Acid (C) and N2; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0809 and Rru_A0810 are separated by 15 nucleotides Rru_A0810 and Rru_A0811 are separated by 283 nucleotides Rru_A0811 and Rru_A0812 are separated by 7 nucleotides
Rru_A0809: Rru_A0809 - hypothetical protein (NCBI), at 964,687 to 966,627
_A0809
Rru_A0810: Rru_A0810 - hypothetical protein (NCBI), at 966,643 to 966,933
_A0810
Rru_A0811: Rru_A0811 - Helix-turn-helix protein, CopG (NCBI), at 967,217 to 967,687
_A0811
Rru_A0812: Rru_A0812 - no description, at 967,695 to 968,819
_A0812
Position (kb) 966
967 Strain fitness (log2 ratio) -2
-1
0
1 at 965.713 kb on + strand, within Rru_A0809 at 965.713 kb on + strand, within Rru_A0809 at 965.714 kb on - strand, within Rru_A0809 at 965.714 kb on - strand, within Rru_A0809 at 965.739 kb on + strand, within Rru_A0809 at 965.829 kb on - strand, within Rru_A0809 at 965.834 kb on + strand, within Rru_A0809 at 966.204 kb on - strand, within Rru_A0809 at 966.331 kb on - strand, within Rru_A0809 at 966.565 kb on + strand at 966.566 kb on - strand at 966.566 kb on - strand at 966.749 kb on + strand, within Rru_A0810 at 966.749 kb on + strand, within Rru_A0810 at 966.749 kb on + strand, within Rru_A0810 at 966.750 kb on - strand, within Rru_A0810 at 966.750 kb on - strand, within Rru_A0810 at 966.750 kb on - strand, within Rru_A0810 at 966.750 kb on - strand, within Rru_A0810 at 966.750 kb on - strand, within Rru_A0810 at 966.756 kb on + strand, within Rru_A0810 at 966.756 kb on + strand, within Rru_A0810 at 966.831 kb on - strand, within Rru_A0810 at 966.835 kb on - strand, within Rru_A0810 at 966.835 kb on - strand, within Rru_A0810 at 966.835 kb on - strand, within Rru_A0810 at 966.916 kb on + strand at 967.086 kb on + strand at 967.087 kb on - strand at 967.087 kb on - strand at 967.087 kb on - strand at 967.087 kb on - strand at 967.087 kb on - strand at 967.136 kb on + strand at 967.136 kb on + strand at 967.137 kb on - strand at 967.137 kb on - strand at 967.191 kb on + strand at 967.369 kb on - strand, within Rru_A0811 at 967.665 kb on + strand at 967.665 kb on + strand at 967.665 kb on + strand at 967.665 kb on + strand at 967.665 kb on + strand at 967.666 kb on - strand at 967.857 kb on - strand, within Rru_A0812 at 967.932 kb on + strand, within Rru_A0812
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light remove 965,713 + Rru_A0809 0.53 +0.0 965,713 + Rru_A0809 0.53 -0.7 965,714 - Rru_A0809 0.53 -1.0 965,714 - Rru_A0809 0.53 +0.0 965,739 + Rru_A0809 0.54 +0.0 965,829 - Rru_A0809 0.59 +0.0 965,834 + Rru_A0809 0.59 +0.0 966,204 - Rru_A0809 0.78 -1.9 966,331 - Rru_A0809 0.85 -0.7 966,565 + -1.0 966,566 - +0.0 966,566 - -0.8 966,749 + Rru_A0810 0.36 -1.3 966,749 + Rru_A0810 0.36 +0.0 966,749 + Rru_A0810 0.36 +0.0 966,750 - Rru_A0810 0.37 -1.5 966,750 - Rru_A0810 0.37 +0.0 966,750 - Rru_A0810 0.37 +0.0 966,750 - Rru_A0810 0.37 -1.3 966,750 - Rru_A0810 0.37 +0.0 966,756 + Rru_A0810 0.39 +0.0 966,756 + Rru_A0810 0.39 -1.0 966,831 - Rru_A0810 0.65 -1.6 966,835 - Rru_A0810 0.66 -2.3 966,835 - Rru_A0810 0.66 +0.0 966,835 - Rru_A0810 0.66 -1.3 966,916 + -1.2 967,086 + -1.0 967,087 - +0.0 967,087 - +0.0 967,087 - +0.0 967,087 - +0.0 967,087 - +0.0 967,136 + -1.3 967,136 + +0.0 967,137 - +0.0 967,137 - +0.0 967,191 + -1.0 967,369 - Rru_A0811 0.32 -1.4 967,665 + +0.0 967,665 + +0.0 967,665 + -1.0 967,665 + +0.0 967,665 + -1.2 967,666 - +0.0 967,857 - Rru_A0812 0.14 +0.0 967,932 + Rru_A0812 0.21 +0.0
Or see this region's nucleotide sequence