Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0739

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0737 and Rru_A0738 are separated by 87 nucleotidesRru_A0738 and Rru_A0739 overlap by 4 nucleotidesRru_A0739 and Rru_A0740 are separated by 43 nucleotidesRru_A0740 and Rru_A0741 are separated by 20 nucleotides Rru_A0737: Rru_A0737 - Phosphoribosyltransferase (NCBI), at 863,287 to 864,027 _A0737 Rru_A0738: Rru_A0738 - Glutaredoxin, GrxC (NCBI), at 864,115 to 864,381 _A0738 Rru_A0739: Rru_A0739 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (NCBI), at 864,378 to 865,217 _A0739 Rru_A0740: Rru_A0740 - Protein of unknown function DUF1178 (NCBI), at 865,261 to 865,794 _A0740 Rru_A0741: Rru_A0741 - Signal Transduction Histidine Kinase (NCBI), at 865,815 to 867,311 _A0741 Position (kb) 864 865 866Strain fitness (log2 ratio) -1 0 1at 863.548 kb on + strand, within Rru_A0737at 863.549 kb on - strand, within Rru_A0737at 863.716 kb on + strand, within Rru_A0737at 863.717 kb on - strand, within Rru_A0737at 863.717 kb on - strand, within Rru_A0737at 863.718 kb on + strand, within Rru_A0737at 863.718 kb on + strand, within Rru_A0737at 863.719 kb on - strand, within Rru_A0737at 863.719 kb on - strand, within Rru_A0737at 864.064 kb on + strandat 864.065 kb on - strandat 864.065 kb on - strandat 864.065 kb on - strandat 864.065 kb on - strandat 864.067 kb on - strandat 864.068 kb on + strandat 864.068 kb on + strandat 864.069 kb on - strandat 864.069 kb on - strandat 864.069 kb on - strandat 864.069 kb on - strandat 864.110 kb on + strandat 864.111 kb on - strandat 864.155 kb on - strand, within Rru_A0738at 864.199 kb on + strand, within Rru_A0738at 864.441 kb on + strandat 864.548 kb on + strand, within Rru_A0739at 864.548 kb on + strand, within Rru_A0739at 864.548 kb on + strand, within Rru_A0739at 864.549 kb on - strand, within Rru_A0739at 864.552 kb on - strand, within Rru_A0739at 864.552 kb on - strand, within Rru_A0739at 864.626 kb on + strand, within Rru_A0739at 864.626 kb on + strand, within Rru_A0739at 864.627 kb on - strand, within Rru_A0739at 864.627 kb on - strand, within Rru_A0739at 864.627 kb on - strand, within Rru_A0739at 864.627 kb on - strand, within Rru_A0739at 864.690 kb on + strand, within Rru_A0739at 864.690 kb on + strand, within Rru_A0739at 864.690 kb on + strand, within Rru_A0739at 864.690 kb on + strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.774 kb on + strand, within Rru_A0739at 864.774 kb on + strand, within Rru_A0739at 864.774 kb on + strand, within Rru_A0739at 864.775 kb on - strand, within Rru_A0739at 864.775 kb on - strand, within Rru_A0739at 864.776 kb on + strand, within Rru_A0739at 864.776 kb on + strand, within Rru_A0739at 864.776 kb on + strand, within Rru_A0739at 864.776 kb on + strand, within Rru_A0739at 864.859 kb on - strand, within Rru_A0739at 864.912 kb on + strand, within Rru_A0739at 864.913 kb on - strand, within Rru_A0739at 865.002 kb on + strand, within Rru_A0739at 865.002 kb on + strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.054 kb on - strand, within Rru_A0739at 865.054 kb on - strand, within Rru_A0739at 865.054 kb on - strand, within Rru_A0739at 865.209 kb on - strandat 865.288 kb on + strandat 865.288 kb on + strandat 865.288 kb on + strandat 865.288 kb on + strandat 865.289 kb on - strandat 865.289 kb on - strandat 865.290 kb on + strandat 865.290 kb on + strandat 865.290 kb on + strandat 865.702 kb on + strand, within Rru_A0740at 865.702 kb on + strand, within Rru_A0740at 865.702 kb on + strand, within Rru_A0740at 865.702 kb on + strand, within Rru_A0740at 865.702 kb on + strand, within Rru_A0740at 865.703 kb on - strand, within Rru_A0740at 865.703 kb on - strand, within Rru_A0740at 865.703 kb on - strand, within Rru_A0740at 865.703 kb on - strand, within Rru_A0740at 865.703 kb on - strand, within Rru_A0740at 865.942 kb on + strandat 865.942 kb on + strandat 865.942 kb on + strandat 865.942 kb on + strandat 865.942 kb on + strandat 865.943 kb on - strandat 865.943 kb on - strandat 865.943 kb on - strandat 865.943 kb on - strandat 865.955 kb on + strandat 865.955 kb on + strandat 865.956 kb on - strandat 866.061 kb on - strand, within Rru_A0741at 866.061 kb on - strand, within Rru_A0741at 866.098 kb on + strand, within Rru_A0741at 866.098 kb on + strand, within Rru_A0741at 866.098 kb on + strand, within Rru_A0741at 866.119 kb on - strand, within Rru_A0741

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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863,548 + Rru_A0737 0.35 -0.3
863,549 - Rru_A0737 0.35 +0.0
863,716 + Rru_A0737 0.58 -0.1
863,717 - Rru_A0737 0.58 +0.0
863,717 - Rru_A0737 0.58 -0.6
863,718 + Rru_A0737 0.58 -1.3
863,718 + Rru_A0737 0.58 +0.0
863,719 - Rru_A0737 0.58 -1.1
863,719 - Rru_A0737 0.58 +0.0
864,064 + +0.0
864,065 - -0.4
864,065 - +0.0
864,065 - +0.0
864,065 - +0.0
864,067 - -1.6
864,068 + +0.0
864,068 + +0.0
864,069 - +0.0
864,069 - -0.0
864,069 - -1.0
864,069 - -0.5
864,110 + -1.0
864,111 - +0.0
864,155 - Rru_A0738 0.15 +0.0
864,199 + Rru_A0738 0.31 +0.0
864,441 + +0.0
864,548 + Rru_A0739 0.20 -1.1
864,548 + Rru_A0739 0.20 -1.0
864,548 + Rru_A0739 0.20 +0.0
864,549 - Rru_A0739 0.20 -1.0
864,552 - Rru_A0739 0.21 -0.4
864,552 - Rru_A0739 0.21 +0.0
864,626 + Rru_A0739 0.30 +0.0
864,626 + Rru_A0739 0.30 +0.0
864,627 - Rru_A0739 0.30 +0.0
864,627 - Rru_A0739 0.30 +0.0
864,627 - Rru_A0739 0.30 +0.0
864,627 - Rru_A0739 0.30 +0.0
864,690 + Rru_A0739 0.37 +0.0
864,690 + Rru_A0739 0.37 +0.0
864,690 + Rru_A0739 0.37 +0.0
864,690 + Rru_A0739 0.37 +0.0
864,691 - Rru_A0739 0.37 +0.0
864,691 - Rru_A0739 0.37 +0.0
864,691 - Rru_A0739 0.37 +0.0
864,691 - Rru_A0739 0.37 +0.0
864,691 - Rru_A0739 0.37 +0.0
864,691 - Rru_A0739 0.37 -0.6
864,691 - Rru_A0739 0.37 +0.0
864,691 - Rru_A0739 0.37 +0.2
864,774 + Rru_A0739 0.47 +0.3
864,774 + Rru_A0739 0.47 +0.0
864,774 + Rru_A0739 0.47 +0.2
864,775 - Rru_A0739 0.47 +0.0
864,775 - Rru_A0739 0.47 +0.0
864,776 + Rru_A0739 0.47 +0.0
864,776 + Rru_A0739 0.47 +0.0
864,776 + Rru_A0739 0.47 +0.6
864,776 + Rru_A0739 0.47 +0.0
864,859 - Rru_A0739 0.57 -1.5
864,912 + Rru_A0739 0.64 +0.0
864,913 - Rru_A0739 0.64 -1.0
865,002 + Rru_A0739 0.74 +0.0
865,002 + Rru_A0739 0.74 -1.0
865,003 - Rru_A0739 0.74 +0.0
865,003 - Rru_A0739 0.74 +0.0
865,003 - Rru_A0739 0.74 -0.6
865,003 - Rru_A0739 0.74 +0.0
865,003 - Rru_A0739 0.74 -0.5
865,054 - Rru_A0739 0.80 -1.1
865,054 - Rru_A0739 0.80 -1.0
865,054 - Rru_A0739 0.80 +0.0
865,209 - +0.0
865,288 + +0.0
865,288 + -0.1
865,288 + +0.0
865,288 + +0.0
865,289 - +0.0
865,289 - +0.0
865,290 + +0.6
865,290 + +0.0
865,290 + -1.0
865,702 + Rru_A0740 0.83 -1.1
865,702 + Rru_A0740 0.83 -1.0
865,702 + Rru_A0740 0.83 +0.0
865,702 + Rru_A0740 0.83 +0.0
865,702 + Rru_A0740 0.83 +0.0
865,703 - Rru_A0740 0.83 +0.7
865,703 - Rru_A0740 0.83 +0.0
865,703 - Rru_A0740 0.83 +1.1
865,703 - Rru_A0740 0.83 +0.0
865,703 - Rru_A0740 0.83 +0.0
865,942 + +0.0
865,942 + +0.0
865,942 + +0.0
865,942 + -1.0
865,942 + +0.0
865,943 - +0.0
865,943 - +0.0
865,943 - +0.0
865,943 - +0.0
865,955 + +0.0
865,955 + +0.0
865,956 - +0.0
866,061 - Rru_A0741 0.16 -1.0
866,061 - Rru_A0741 0.16 +0.0
866,098 + Rru_A0741 0.19 -1.0
866,098 + Rru_A0741 0.19 +0.0
866,098 + Rru_A0741 0.19 +0.0
866,119 - Rru_A0741 0.20 +0.0

Or see this region's nucleotide sequence