Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0635

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0634 and Rru_A0635 are separated by 165 nucleotidesRru_A0635 and Rru_A0636 are separated by 3 nucleotidesRru_A0636 and Rru_A0637 are separated by 414 nucleotides Rru_A0634: Rru_A0634 - Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI), at 754,155 to 755,969 _A0634 Rru_A0635: Rru_A0635 - Na+/solute symporter (NCBI), at 756,135 to 757,814 _A0635 Rru_A0636: Rru_A0636 - Protein of unknown function DUF485 (NCBI), at 757,818 to 758,126 _A0636 Rru_A0637: Rru_A0637 - hypothetical protein (NCBI), at 758,541 to 758,927 _A0637 Position (kb) 756 757 758Strain fitness (log2 ratio) -1 0 1at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.188 kb on + strand, within Rru_A0634at 755.188 kb on + strand, within Rru_A0634at 755.188 kb on + strand, within Rru_A0634at 755.189 kb on - strand, within Rru_A0634at 755.189 kb on - strand, within Rru_A0634at 755.881 kb on + strandat 755.881 kb on + strandat 755.881 kb on + strandat 755.882 kb on - strandat 755.882 kb on - strandat 756.060 kb on - strandat 756.060 kb on - strandat 756.060 kb on - strandat 756.184 kb on + strandat 756.184 kb on + strandat 756.185 kb on - strandat 756.185 kb on - strandat 756.185 kb on - strandat 756.299 kb on - strandat 756.625 kb on + strand, within Rru_A0635at 756.865 kb on + strand, within Rru_A0635at 756.865 kb on + strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.871 kb on + strand, within Rru_A0635at 756.871 kb on + strand, within Rru_A0635at 756.872 kb on - strand, within Rru_A0635at 756.892 kb on + strand, within Rru_A0635at 756.893 kb on - strand, within Rru_A0635at 756.905 kb on + strand, within Rru_A0635at 756.906 kb on - strand, within Rru_A0635at 757.207 kb on + strand, within Rru_A0635at 757.207 kb on + strand, within Rru_A0635at 757.207 kb on + strand, within Rru_A0635at 757.207 kb on + strand, within Rru_A0635at 757.207 kb on + strand, within Rru_A0635at 757.208 kb on - strand, within Rru_A0635at 757.208 kb on - strand, within Rru_A0635at 757.208 kb on - strand, within Rru_A0635at 757.208 kb on - strand, within Rru_A0635at 757.249 kb on + strand, within Rru_A0635at 757.250 kb on - strand, within Rru_A0635at 757.399 kb on + strand, within Rru_A0635at 757.399 kb on + strand, within Rru_A0635at 757.399 kb on + strand, within Rru_A0635at 757.400 kb on - strand, within Rru_A0635at 757.400 kb on - strand, within Rru_A0635at 757.400 kb on - strand, within Rru_A0635at 757.474 kb on + strand, within Rru_A0635at 757.475 kb on - strand, within Rru_A0635at 757.544 kb on - strand, within Rru_A0635at 757.544 kb on - strand, within Rru_A0635at 757.544 kb on - strand, within Rru_A0635at 757.544 kb on - strand, within Rru_A0635at 757.600 kb on + strand, within Rru_A0635at 757.600 kb on + strand, within Rru_A0635at 757.600 kb on + strand, within Rru_A0635at 757.600 kb on + strand, within Rru_A0635at 757.601 kb on - strand, within Rru_A0635at 757.639 kb on + strand, within Rru_A0635at 757.639 kb on + strand, within Rru_A0635at 757.640 kb on - strand, within Rru_A0635at 757.640 kb on - strand, within Rru_A0635at 757.640 kb on - strand, within Rru_A0635at 757.640 kb on - strand, within Rru_A0635at 757.692 kb on + strandat 757.819 kb on + strandat 757.819 kb on + strandat 757.820 kb on - strandat 757.882 kb on + strand, within Rru_A0636at 757.882 kb on + strand, within Rru_A0636at 757.882 kb on + strand, within Rru_A0636at 757.882 kb on + strand, within Rru_A0636at 757.882 kb on + strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 758.017 kb on + strand, within Rru_A0636at 758.017 kb on + strand, within Rru_A0636at 758.018 kb on - strand, within Rru_A0636at 758.018 kb on - strand, within Rru_A0636at 758.018 kb on - strand, within Rru_A0636at 758.110 kb on + strandat 758.111 kb on - strandat 758.160 kb on + strandat 758.160 kb on + strandat 758.160 kb on + strandat 758.163 kb on + strandat 758.163 kb on + strandat 758.164 kb on - strandat 758.232 kb on + strandat 758.265 kb on - strandat 758.265 kb on - strandat 758.328 kb on + strandat 758.328 kb on + strandat 758.328 kb on + strandat 758.328 kb on + strandat 758.344 kb on - strandat 758.355 kb on + strandat 758.356 kb on - strandat 758.558 kb on - strandat 758.782 kb on + strand, within Rru_A0637at 758.782 kb on + strand, within Rru_A0637at 758.783 kb on - strand, within Rru_A0637at 758.813 kb on - strand, within Rru_A0637

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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755,186 + Rru_A0634 0.57 -0.0
755,186 + Rru_A0634 0.57 -0.0
755,186 + Rru_A0634 0.57 -0.4
755,186 + Rru_A0634 0.57 -1.0
755,186 + Rru_A0634 0.57 -1.3
755,186 + Rru_A0634 0.57 -0.0
755,186 + Rru_A0634 0.57 -0.0
755,186 + Rru_A0634 0.57 -0.0
755,186 + Rru_A0634 0.57 -1.0
755,186 + Rru_A0634 0.57 -0.0
755,187 - Rru_A0634 0.57 -0.0
755,187 - Rru_A0634 0.57 -0.9
755,187 - Rru_A0634 0.57 -0.0
755,187 - Rru_A0634 0.57 -0.0
755,187 - Rru_A0634 0.57 -0.5
755,187 - Rru_A0634 0.57 -0.0
755,187 - Rru_A0634 0.57 -0.2
755,187 - Rru_A0634 0.57 -1.6
755,188 + Rru_A0634 0.57 -0.0
755,188 + Rru_A0634 0.57 -0.9
755,188 + Rru_A0634 0.57 -0.0
755,189 - Rru_A0634 0.57 -0.0
755,189 - Rru_A0634 0.57 -1.0
755,881 + -1.0
755,881 + -0.0
755,881 + -0.0
755,882 - -0.0
755,882 - -0.7
756,060 - -0.0
756,060 - -0.0
756,060 - -0.9
756,184 + -0.6
756,184 + -0.8
756,185 - -0.0
756,185 - -0.8
756,185 - -0.0
756,299 - -0.0
756,625 + Rru_A0635 0.29 -1.0
756,865 + Rru_A0635 0.43 -0.0
756,865 + Rru_A0635 0.43 -1.3
756,866 - Rru_A0635 0.44 -0.8
756,866 - Rru_A0635 0.44 -0.0
756,866 - Rru_A0635 0.44 -0.0
756,866 - Rru_A0635 0.44 -0.0
756,871 + Rru_A0635 0.44 -0.4
756,871 + Rru_A0635 0.44 -1.3
756,872 - Rru_A0635 0.44 -0.0
756,892 + Rru_A0635 0.45 -0.7
756,893 - Rru_A0635 0.45 -1.0
756,905 + Rru_A0635 0.46 -0.0
756,906 - Rru_A0635 0.46 -1.0
757,207 + Rru_A0635 0.64 -0.0
757,207 + Rru_A0635 0.64 -0.0
757,207 + Rru_A0635 0.64 -0.0
757,207 + Rru_A0635 0.64 -0.0
757,207 + Rru_A0635 0.64 -0.0
757,208 - Rru_A0635 0.64 -0.0
757,208 - Rru_A0635 0.64 -0.0
757,208 - Rru_A0635 0.64 -0.2
757,208 - Rru_A0635 0.64 -0.8
757,249 + Rru_A0635 0.66 -0.0
757,250 - Rru_A0635 0.66 -0.0
757,399 + Rru_A0635 0.75 -0.0
757,399 + Rru_A0635 0.75 -0.0
757,399 + Rru_A0635 0.75 -0.0
757,400 - Rru_A0635 0.75 -0.6
757,400 - Rru_A0635 0.75 -0.0
757,400 - Rru_A0635 0.75 -1.6
757,474 + Rru_A0635 0.80 -0.0
757,475 - Rru_A0635 0.80 -0.0
757,544 - Rru_A0635 0.84 -0.5
757,544 - Rru_A0635 0.84 -0.0
757,544 - Rru_A0635 0.84 -0.0
757,544 - Rru_A0635 0.84 -0.1
757,600 + Rru_A0635 0.87 -0.0
757,600 + Rru_A0635 0.87 -0.4
757,600 + Rru_A0635 0.87 -0.0
757,600 + Rru_A0635 0.87 -0.0
757,601 - Rru_A0635 0.87 -0.0
757,639 + Rru_A0635 0.90 -0.0
757,639 + Rru_A0635 0.90 -0.0
757,640 - Rru_A0635 0.90 -0.0
757,640 - Rru_A0635 0.90 -1.0
757,640 - Rru_A0635 0.90 -0.0
757,640 - Rru_A0635 0.90 -0.0
757,692 + +1.0
757,819 + -0.0
757,819 + -0.0
757,820 - -0.6
757,882 + Rru_A0636 0.21 -0.6
757,882 + Rru_A0636 0.21 -0.6
757,882 + Rru_A0636 0.21 -0.0
757,882 + Rru_A0636 0.21 -0.0
757,882 + Rru_A0636 0.21 -0.0
757,883 - Rru_A0636 0.21 -0.7
757,883 - Rru_A0636 0.21 -0.7
757,883 - Rru_A0636 0.21 -0.0
757,883 - Rru_A0636 0.21 -1.2
757,883 - Rru_A0636 0.21 -0.0
757,883 - Rru_A0636 0.21 -0.0
758,017 + Rru_A0636 0.64 -0.2
758,017 + Rru_A0636 0.64 -0.0
758,018 - Rru_A0636 0.65 -0.9
758,018 - Rru_A0636 0.65 -0.0
758,018 - Rru_A0636 0.65 -1.0
758,110 + -0.0
758,111 - -0.0
758,160 + -0.6
758,160 + -0.4
758,160 + -0.0
758,163 + -0.0
758,163 + -0.0
758,164 - -1.0
758,232 + -0.0
758,265 - -1.1
758,265 - -0.0
758,328 + -0.0
758,328 + -0.0
758,328 + -0.0
758,328 + -0.0
758,344 - -0.0
758,355 + -0.4
758,356 - -1.1
758,558 - -0.0
758,782 + Rru_A0637 0.62 -0.0
758,782 + Rru_A0637 0.62 -1.6
758,783 - Rru_A0637 0.63 -0.0
758,813 - Rru_A0637 0.70 -0.0

Or see this region's nucleotide sequence