Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0526

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0524 and Rru_A0525 are separated by 33 nucleotidesRru_A0525 and Rru_A0526 are separated by 243 nucleotidesRru_A0526 and Rru_A0527 are separated by 98 nucleotidesRru_A0527 and Rru_A0528 overlap by 50 nucleotides Rru_A0524: Rru_A0524 - MCP methyltransferase, CheR-type (NCBI), at 618,843 to 619,685 _A0524 Rru_A0525: Rru_A0525 - Two component Transcriptional regulator, Winged helix family (NCBI), at 619,719 to 620,438 _A0525 Rru_A0526: Rru_A0526 - ATPase FliI/YscN (NCBI), at 620,682 to 622,109 _A0526 Rru_A0527: Rru_A0527 - hypothetical protein (NCBI), at 622,208 to 622,660 _A0527 Rru_A0528: Rru_A0528 - Heat shock protein DnaJ-like (NCBI), at 622,611 to 623,867 _A0528 Position (kb) 620 621 622 623Strain fitness (log2 ratio) -1 0 1at 619.784 kb on - strandat 619.784 kb on - strandat 619.784 kb on - strandat 619.811 kb on - strand, within Rru_A0525at 619.811 kb on - strand, within Rru_A0525at 619.811 kb on - strand, within Rru_A0525at 619.904 kb on - strand, within Rru_A0525at 619.975 kb on + strand, within Rru_A0525at 619.976 kb on - strand, within Rru_A0525at 619.976 kb on - strand, within Rru_A0525at 620.126 kb on + strand, within Rru_A0525at 620.126 kb on + strand, within Rru_A0525at 620.146 kb on + strand, within Rru_A0525at 620.147 kb on - strand, within Rru_A0525at 620.147 kb on - strand, within Rru_A0525at 620.147 kb on - strand, within Rru_A0525at 620.147 kb on - strand, within Rru_A0525at 620.305 kb on + strand, within Rru_A0525at 620.306 kb on - strand, within Rru_A0525at 620.503 kb on + strandat 620.570 kb on - strandat 620.579 kb on - strandat 620.662 kb on + strandat 620.662 kb on + strandat 620.967 kb on + strand, within Rru_A0526at 620.967 kb on + strand, within Rru_A0526at 620.967 kb on + strand, within Rru_A0526at 621.200 kb on + strand, within Rru_A0526at 621.390 kb on + strand, within Rru_A0526at 621.391 kb on - strand, within Rru_A0526at 621.391 kb on - strand, within Rru_A0526at 621.391 kb on - strand, within Rru_A0526at 621.391 kb on - strand, within Rru_A0526at 621.392 kb on + strand, within Rru_A0526at 621.392 kb on + strand, within Rru_A0526at 621.392 kb on + strand, within Rru_A0526at 621.392 kb on + strand, within Rru_A0526at 621.392 kb on + strand, within Rru_A0526at 621.392 kb on + strand, within Rru_A0526at 621.392 kb on + strand, within Rru_A0526at 621.392 kb on + strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.393 kb on - strand, within Rru_A0526at 621.414 kb on + strand, within Rru_A0526at 621.414 kb on + strand, within Rru_A0526at 621.415 kb on - strand, within Rru_A0526at 621.529 kb on - strand, within Rru_A0526at 621.531 kb on - strand, within Rru_A0526at 621.689 kb on + strand, within Rru_A0526at 621.689 kb on + strand, within Rru_A0526at 621.690 kb on - strand, within Rru_A0526at 621.740 kb on + strand, within Rru_A0526at 621.741 kb on - strand, within Rru_A0526at 621.776 kb on + strand, within Rru_A0526at 621.777 kb on - strand, within Rru_A0526at 621.831 kb on + strand, within Rru_A0526at 621.831 kb on + strand, within Rru_A0526at 621.832 kb on - strand, within Rru_A0526at 621.840 kb on - strand, within Rru_A0526at 621.975 kb on + strandat 622.107 kb on + strandat 622.108 kb on - strandat 622.129 kb on + strandat 622.130 kb on - strandat 622.130 kb on - strandat 622.160 kb on + strandat 622.160 kb on + strandat 622.243 kb on + strandat 622.421 kb on + strand, within Rru_A0527at 622.421 kb on + strand, within Rru_A0527at 622.422 kb on - strand, within Rru_A0527at 622.422 kb on - strand, within Rru_A0527at 622.894 kb on + strand, within Rru_A0528at 622.895 kb on - strand, within Rru_A0528at 622.895 kb on - strand, within Rru_A0528at 622.943 kb on + strand, within Rru_A0528at 622.943 kb on + strand, within Rru_A0528at 622.943 kb on + strand, within Rru_A0528at 622.943 kb on + strand, within Rru_A0528at 622.943 kb on + strand, within Rru_A0528at 622.944 kb on - strand, within Rru_A0528

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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619,784 - +0.0
619,784 - +0.0
619,784 - +0.0
619,811 - Rru_A0525 0.13 +0.0
619,811 - Rru_A0525 0.13 +0.0
619,811 - Rru_A0525 0.13 +0.0
619,904 - Rru_A0525 0.26 +0.0
619,975 + Rru_A0525 0.36 +0.0
619,976 - Rru_A0525 0.36 -1.3
619,976 - Rru_A0525 0.36 +0.0
620,126 + Rru_A0525 0.57 +0.0
620,126 + Rru_A0525 0.57 +0.0
620,146 + Rru_A0525 0.59 +0.0
620,147 - Rru_A0525 0.59 +0.0
620,147 - Rru_A0525 0.59 +0.0
620,147 - Rru_A0525 0.59 -1.1
620,147 - Rru_A0525 0.59 +0.0
620,305 + Rru_A0525 0.81 +0.0
620,306 - Rru_A0525 0.82 +0.0
620,503 + +0.0
620,570 - -1.0
620,579 - +0.0
620,662 + +0.0
620,662 + +0.0
620,967 + Rru_A0526 0.20 -0.6
620,967 + Rru_A0526 0.20 +0.0
620,967 + Rru_A0526 0.20 +0.0
621,200 + Rru_A0526 0.36 +0.0
621,390 + Rru_A0526 0.50 -0.7
621,391 - Rru_A0526 0.50 +0.0
621,391 - Rru_A0526 0.50 +0.0
621,391 - Rru_A0526 0.50 +0.0
621,391 - Rru_A0526 0.50 -0.8
621,392 + Rru_A0526 0.50 -0.7
621,392 + Rru_A0526 0.50 +0.0
621,392 + Rru_A0526 0.50 -0.6
621,392 + Rru_A0526 0.50 -1.0
621,392 + Rru_A0526 0.50 -0.7
621,392 + Rru_A0526 0.50 +0.0
621,392 + Rru_A0526 0.50 +0.0
621,392 + Rru_A0526 0.50 +0.0
621,393 - Rru_A0526 0.50 +0.0
621,393 - Rru_A0526 0.50 +0.0
621,393 - Rru_A0526 0.50 -0.6
621,393 - Rru_A0526 0.50 -1.0
621,393 - Rru_A0526 0.50 +0.0
621,393 - Rru_A0526 0.50 -0.2
621,393 - Rru_A0526 0.50 +0.0
621,393 - Rru_A0526 0.50 +0.0
621,393 - Rru_A0526 0.50 -1.6
621,393 - Rru_A0526 0.50 +0.0
621,414 + Rru_A0526 0.51 +0.0
621,414 + Rru_A0526 0.51 +0.0
621,415 - Rru_A0526 0.51 +0.0
621,529 - Rru_A0526 0.59 -0.7
621,531 - Rru_A0526 0.59 +0.0
621,689 + Rru_A0526 0.71 -0.5
621,689 + Rru_A0526 0.71 +0.0
621,690 - Rru_A0526 0.71 -0.7
621,740 + Rru_A0526 0.74 +0.0
621,741 - Rru_A0526 0.74 -0.5
621,776 + Rru_A0526 0.77 -1.0
621,777 - Rru_A0526 0.77 +0.0
621,831 + Rru_A0526 0.80 +0.0
621,831 + Rru_A0526 0.80 +0.0
621,832 - Rru_A0526 0.81 +0.0
621,840 - Rru_A0526 0.81 +0.0
621,975 + +0.0
622,107 + +0.0
622,108 - +0.0
622,129 + +0.0
622,130 - +0.0
622,130 - +0.0
622,160 + +0.0
622,160 + +0.0
622,243 + -0.7
622,421 + Rru_A0527 0.47 +0.0
622,421 + Rru_A0527 0.47 +0.0
622,422 - Rru_A0527 0.47 +0.0
622,422 - Rru_A0527 0.47 +0.0
622,894 + Rru_A0528 0.23 -0.2
622,895 - Rru_A0528 0.23 -1.6
622,895 - Rru_A0528 0.23 +0.0
622,943 + Rru_A0528 0.26 -0.3
622,943 + Rru_A0528 0.26 +0.0
622,943 + Rru_A0528 0.26 +0.0
622,943 + Rru_A0528 0.26 +0.0
622,943 + Rru_A0528 0.26 +0.0
622,944 - Rru_A0528 0.26 -0.4

Or see this region's nucleotide sequence