Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0374

Experiment: L-Malic Acid (C) and N2; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0372 and Rru_A0373 are separated by 131 nucleotidesRru_A0373 and Rru_A0374 are separated by 49 nucleotidesRru_A0374 and Rru_A0375 are separated by 114 nucleotidesRru_A0375 and Rru_A0376 are separated by 27 nucleotides Rru_A0372: Rru_A0372 - hypothetical protein (NCBI), at 447,942 to 450,014 _A0372 Rru_A0373: Rru_A0373 - flavodoxin/nitric oxide synthase (NCBI), at 450,146 to 450,754 _A0373 Rru_A0374: Rru_A0374 - hypothetical protein (NCBI), at 450,804 to 451,733 _A0374 Rru_A0375: Rru_A0375 - Pirin-like (NCBI), at 451,848 to 452,543 _A0375 Rru_A0376: Rru_A0376 - Transcriptional Regulator, LytR/AlgR family (NCBI), at 452,571 to 453,287 _A0376 Position (kb) 450 451 452Strain fitness (log2 ratio) -2 -1 0 1at 450.062 kb on + strandat 450.062 kb on + strandat 450.101 kb on + strandat 450.102 kb on - strandat 450.109 kb on + strandat 450.109 kb on + strandat 450.109 kb on + strandat 450.110 kb on - strandat 450.110 kb on - strandat 450.176 kb on + strandat 450.176 kb on + strandat 450.176 kb on + strandat 450.176 kb on + strandat 450.176 kb on + strandat 450.177 kb on - strandat 450.179 kb on + strandat 450.188 kb on + strandat 450.188 kb on + strandat 450.188 kb on + strandat 450.188 kb on + strandat 450.189 kb on - strandat 450.189 kb on - strandat 450.189 kb on - strandat 450.189 kb on - strandat 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.281 kb on - strand, within Rru_A0373at 450.281 kb on - strand, within Rru_A0373at 450.281 kb on - strand, within Rru_A0373at 450.362 kb on + strand, within Rru_A0373at 450.403 kb on + strand, within Rru_A0373at 450.403 kb on + strand, within Rru_A0373at 450.403 kb on + strand, within Rru_A0373at 450.403 kb on + strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.539 kb on + strand, within Rru_A0373at 450.540 kb on - strand, within Rru_A0373at 450.540 kb on - strand, within Rru_A0373at 450.843 kb on + strandat 450.843 kb on + strandat 450.844 kb on - strandat 450.948 kb on + strand, within Rru_A0374at 450.948 kb on + strand, within Rru_A0374at 450.948 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.958 kb on - strand, within Rru_A0374at 450.958 kb on - strand, within Rru_A0374at 451.119 kb on + strand, within Rru_A0374at 451.119 kb on + strand, within Rru_A0374at 451.120 kb on - strand, within Rru_A0374at 451.120 kb on - strand, within Rru_A0374at 451.120 kb on - strand, within Rru_A0374at 451.141 kb on - strand, within Rru_A0374at 451.317 kb on + strand, within Rru_A0374at 451.318 kb on - strand, within Rru_A0374at 451.318 kb on - strand, within Rru_A0374at 451.341 kb on + strand, within Rru_A0374at 451.342 kb on - strand, within Rru_A0374at 451.343 kb on + strand, within Rru_A0374at 451.344 kb on - strand, within Rru_A0374at 451.344 kb on - strand, within Rru_A0374at 451.374 kb on + strand, within Rru_A0374at 451.375 kb on - strand, within Rru_A0374at 451.516 kb on - strand, within Rru_A0374at 451.576 kb on - strand, within Rru_A0374at 451.576 kb on - strand, within Rru_A0374at 451.591 kb on - strand, within Rru_A0374at 451.645 kb on - strandat 451.645 kb on - strandat 451.645 kb on - strandat 451.648 kb on - strandat 451.666 kb on + strandat 451.667 kb on - strandat 451.832 kb on + strandat 451.835 kb on - strandat 451.935 kb on + strand, within Rru_A0375at 451.935 kb on + strand, within Rru_A0375at 451.936 kb on - strand, within Rru_A0375at 451.936 kb on - strand, within Rru_A0375at 451.936 kb on - strand, within Rru_A0375at 451.936 kb on - strand, within Rru_A0375at 451.936 kb on - strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.047 kb on - strand, within Rru_A0375at 452.047 kb on - strand, within Rru_A0375at 452.157 kb on + strand, within Rru_A0375at 452.158 kb on - strand, within Rru_A0375at 452.158 kb on - strand, within Rru_A0375at 452.177 kb on + strand, within Rru_A0375at 452.178 kb on - strand, within Rru_A0375at 452.178 kb on - strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.404 kb on - strand, within Rru_A0375at 452.404 kb on - strand, within Rru_A0375at 452.404 kb on - strand, within Rru_A0375at 452.404 kb on - strand, within Rru_A0375at 452.405 kb on + strand, within Rru_A0375at 452.406 kb on - strand, within Rru_A0375at 452.541 kb on + strandat 452.710 kb on + strand, within Rru_A0376at 452.711 kb on - strand, within Rru_A0376at 452.711 kb on - strand, within Rru_A0376at 452.711 kb on - strand, within Rru_A0376at 452.711 kb on - strand, within Rru_A0376

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light
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450,062 + +0.0
450,062 + +0.0
450,101 + +0.0
450,102 - +0.0
450,109 + +0.0
450,109 + +0.0
450,109 + +0.0
450,110 - +0.0
450,110 - -1.4
450,176 + -0.5
450,176 + +0.0
450,176 + -1.2
450,176 + -0.8
450,176 + +0.0
450,177 - -0.7
450,179 + +0.0
450,188 + +0.0
450,188 + -1.4
450,188 + +0.0
450,188 + +0.0
450,189 - +0.0
450,189 - +0.0
450,189 - +0.0
450,189 - +0.0
450,280 + Rru_A0373 0.22 +0.0
450,280 + Rru_A0373 0.22 +0.0
450,280 + Rru_A0373 0.22 +0.0
450,280 + Rru_A0373 0.22 +0.0
450,280 + Rru_A0373 0.22 -1.1
450,280 + Rru_A0373 0.22 +0.0
450,280 + Rru_A0373 0.22 +0.0
450,281 - Rru_A0373 0.22 -1.2
450,281 - Rru_A0373 0.22 +0.0
450,281 - Rru_A0373 0.22 +0.0
450,362 + Rru_A0373 0.35 -0.9
450,403 + Rru_A0373 0.42 -1.4
450,403 + Rru_A0373 0.42 +0.0
450,403 + Rru_A0373 0.42 -1.0
450,403 + Rru_A0373 0.42 +0.0
450,404 - Rru_A0373 0.42 +0.0
450,404 - Rru_A0373 0.42 +0.0
450,404 - Rru_A0373 0.42 +0.0
450,404 - Rru_A0373 0.42 +0.0
450,404 - Rru_A0373 0.42 +0.0
450,404 - Rru_A0373 0.42 +0.0
450,539 + Rru_A0373 0.65 +0.0
450,540 - Rru_A0373 0.65 -1.6
450,540 - Rru_A0373 0.65 +0.0
450,843 + -0.9
450,843 + +0.0
450,844 - +0.0
450,948 + Rru_A0374 0.15 +1.0
450,948 + Rru_A0374 0.15 +0.0
450,948 + Rru_A0374 0.15 -0.7
450,957 + Rru_A0374 0.16 -0.6
450,957 + Rru_A0374 0.16 -1.0
450,957 + Rru_A0374 0.16 +0.0
450,957 + Rru_A0374 0.16 +0.0
450,957 + Rru_A0374 0.16 +0.0
450,958 - Rru_A0374 0.17 -0.7
450,958 - Rru_A0374 0.17 -1.6
451,119 + Rru_A0374 0.34 -1.0
451,119 + Rru_A0374 0.34 +0.0
451,120 - Rru_A0374 0.34 +0.0
451,120 - Rru_A0374 0.34 +0.0
451,120 - Rru_A0374 0.34 -0.6
451,141 - Rru_A0374 0.36 +0.0
451,317 + Rru_A0374 0.55 -2.6
451,318 - Rru_A0374 0.55 +0.0
451,318 - Rru_A0374 0.55 +0.0
451,341 + Rru_A0374 0.58 -0.9
451,342 - Rru_A0374 0.58 +0.0
451,343 + Rru_A0374 0.58 +0.0
451,344 - Rru_A0374 0.58 +0.0
451,344 - Rru_A0374 0.58 +0.0
451,374 + Rru_A0374 0.61 +0.0
451,375 - Rru_A0374 0.61 +0.0
451,516 - Rru_A0374 0.77 -0.1
451,576 - Rru_A0374 0.83 +0.0
451,576 - Rru_A0374 0.83 +0.0
451,591 - Rru_A0374 0.85 +0.0
451,645 - +0.0
451,645 - -0.9
451,645 - -0.5
451,648 - -1.6
451,666 + +0.0
451,667 - +0.0
451,832 + +0.0
451,835 - +0.0
451,935 + Rru_A0375 0.12 -1.0
451,935 + Rru_A0375 0.12 -0.8
451,936 - Rru_A0375 0.13 +0.0
451,936 - Rru_A0375 0.13 +0.0
451,936 - Rru_A0375 0.13 +0.0
451,936 - Rru_A0375 0.13 +0.0
451,936 - Rru_A0375 0.13 -1.0
452,046 + Rru_A0375 0.28 -0.9
452,046 + Rru_A0375 0.28 -2.0
452,046 + Rru_A0375 0.28 +0.0
452,046 + Rru_A0375 0.28 +0.0
452,046 + Rru_A0375 0.28 -1.0
452,046 + Rru_A0375 0.28 +0.0
452,047 - Rru_A0375 0.29 +0.0
452,047 - Rru_A0375 0.29 +0.0
452,157 + Rru_A0375 0.44 -0.9
452,158 - Rru_A0375 0.45 +0.0
452,158 - Rru_A0375 0.45 +0.0
452,177 + Rru_A0375 0.47 +0.0
452,178 - Rru_A0375 0.47 +0.0
452,178 - Rru_A0375 0.47 +0.0
452,403 + Rru_A0375 0.80 +0.0
452,403 + Rru_A0375 0.80 +0.0
452,403 + Rru_A0375 0.80 -0.9
452,403 + Rru_A0375 0.80 +0.0
452,403 + Rru_A0375 0.80 +0.0
452,404 - Rru_A0375 0.80 +0.0
452,404 - Rru_A0375 0.80 -1.0
452,404 - Rru_A0375 0.80 +0.0
452,404 - Rru_A0375 0.80 -1.0
452,405 + Rru_A0375 0.80 +0.0
452,406 - Rru_A0375 0.80 +0.0
452,541 + +0.0
452,710 + Rru_A0376 0.19 -1.1
452,711 - Rru_A0376 0.20 +0.0
452,711 - Rru_A0376 0.20 +0.0
452,711 - Rru_A0376 0.20 -1.0
452,711 - Rru_A0376 0.20 +0.0

Or see this region's nucleotide sequence