Experiment: L-Malic Acid (C) and N2; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0310 and Rru_A0311 are separated by 78 nucleotides Rru_A0311 and Rru_A0312 are separated by 160 nucleotides Rru_A0312 and Rru_A0313 overlap by 1 nucleotides
Rru_A0310: Rru_A0310 - Ferredoxin hydrogenase (NCBI), at 377,880 to 379,268
_A0310
Rru_A0311: Rru_A0311 - Formate/nitrite transporter (NCBI), at 379,347 to 380,279
_A0311
Rru_A0312: Rru_A0312 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 380,440 to 380,853
_A0312
Rru_A0313: Rru_A0313 - Aldehyde ferredoxin oxidoreductase (NCBI), at 380,853 to 382,136
_A0313
Position (kb) 379
380
381 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 378.477 kb on + strand, within Rru_A0310 at 378.522 kb on + strand, within Rru_A0310 at 378.522 kb on + strand, within Rru_A0310 at 378.523 kb on - strand, within Rru_A0310 at 378.523 kb on - strand, within Rru_A0310 at 378.523 kb on - strand, within Rru_A0310 at 378.532 kb on - strand, within Rru_A0310 at 378.532 kb on - strand, within Rru_A0310 at 378.567 kb on - strand, within Rru_A0310 at 378.602 kb on + strand, within Rru_A0310 at 378.656 kb on + strand, within Rru_A0310 at 378.657 kb on - strand, within Rru_A0310 at 378.777 kb on + strand, within Rru_A0310 at 378.778 kb on - strand, within Rru_A0310 at 378.778 kb on - strand, within Rru_A0310 at 378.778 kb on - strand, within Rru_A0310 at 378.778 kb on - strand, within Rru_A0310 at 378.778 kb on - strand, within Rru_A0310 at 378.915 kb on + strand, within Rru_A0310 at 379.183 kb on - strand at 379.192 kb on - strand at 379.242 kb on + strand at 379.266 kb on + strand at 379.267 kb on - strand at 379.326 kb on + strand at 379.327 kb on - strand at 379.327 kb on - strand at 379.353 kb on + strand at 379.356 kb on + strand at 379.356 kb on + strand at 379.356 kb on + strand at 379.356 kb on + strand at 379.357 kb on - strand at 379.357 kb on - strand at 379.357 kb on - strand at 379.357 kb on - strand at 379.357 kb on - strand at 379.395 kb on + strand at 379.396 kb on - strand at 379.764 kb on + strand, within Rru_A0311 at 379.764 kb on + strand, within Rru_A0311 at 379.764 kb on + strand, within Rru_A0311 at 379.765 kb on - strand, within Rru_A0311 at 379.765 kb on - strand, within Rru_A0311 at 379.765 kb on - strand, within Rru_A0311 at 379.765 kb on - strand, within Rru_A0311 at 379.765 kb on - strand, within Rru_A0311 at 379.803 kb on + strand, within Rru_A0311 at 379.804 kb on - strand, within Rru_A0311 at 379.804 kb on - strand, within Rru_A0311 at 379.870 kb on - strand, within Rru_A0311 at 379.870 kb on - strand, within Rru_A0311 at 380.385 kb on - strand at 381.162 kb on + strand, within Rru_A0313 at 381.162 kb on + strand, within Rru_A0313 at 381.162 kb on + strand, within Rru_A0313 at 381.213 kb on + strand, within Rru_A0313 at 381.213 kb on + strand, within Rru_A0313 at 381.213 kb on + strand, within Rru_A0313 at 381.214 kb on - strand, within Rru_A0313 at 381.214 kb on - strand, within Rru_A0313 at 381.214 kb on - strand, within Rru_A0313
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; high light remove 378,477 + Rru_A0310 0.43 +0.1 378,522 + Rru_A0310 0.46 -1.6 378,522 + Rru_A0310 0.46 +0.1 378,523 - Rru_A0310 0.46 -1.1 378,523 - Rru_A0310 0.46 +0.1 378,523 - Rru_A0310 0.46 +0.1 378,532 - Rru_A0310 0.47 +0.1 378,532 - Rru_A0310 0.47 +0.1 378,567 - Rru_A0310 0.49 -1.3 378,602 + Rru_A0310 0.52 +0.1 378,656 + Rru_A0310 0.56 +0.1 378,657 - Rru_A0310 0.56 +0.1 378,777 + Rru_A0310 0.65 +0.1 378,778 - Rru_A0310 0.65 -0.9 378,778 - Rru_A0310 0.65 +0.1 378,778 - Rru_A0310 0.65 +0.1 378,778 - Rru_A0310 0.65 +0.1 378,778 - Rru_A0310 0.65 +0.1 378,915 + Rru_A0310 0.75 +0.1 379,183 - +0.1 379,192 - -0.8 379,242 + -3.0 379,266 + +0.1 379,267 - -1.4 379,326 + +0.1 379,327 - +0.1 379,327 - +0.1 379,353 + +0.1 379,356 + -0.9 379,356 + +0.1 379,356 + +0.1 379,356 + +0.1 379,357 - -1.4 379,357 - +0.1 379,357 - +0.1 379,357 - +0.1 379,357 - +0.1 379,395 + +0.1 379,396 - -1.6 379,764 + Rru_A0311 0.45 +0.1 379,764 + Rru_A0311 0.45 +0.1 379,764 + Rru_A0311 0.45 -2.8 379,765 - Rru_A0311 0.45 +0.1 379,765 - Rru_A0311 0.45 +0.1 379,765 - Rru_A0311 0.45 +0.1 379,765 - Rru_A0311 0.45 -1.8 379,765 - Rru_A0311 0.45 -2.9 379,803 + Rru_A0311 0.49 +0.1 379,804 - Rru_A0311 0.49 +0.1 379,804 - Rru_A0311 0.49 -0.9 379,870 - Rru_A0311 0.56 -1.3 379,870 - Rru_A0311 0.56 +0.1 380,385 - -1.5 381,162 + Rru_A0313 0.24 +0.1 381,162 + Rru_A0313 0.24 -1.5 381,162 + Rru_A0313 0.24 -1.1 381,213 + Rru_A0313 0.28 +0.1 381,213 + Rru_A0313 0.28 +0.1 381,213 + Rru_A0313 0.28 +0.1 381,214 - Rru_A0313 0.28 +0.1 381,214 - Rru_A0313 0.28 -0.9 381,214 - Rru_A0313 0.28 -0.9
Or see this region's nucleotide sequence