Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS10200

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS10195 and RS_RS10200 are separated by 16 nucleotidesRS_RS10200 and RS_RS10205 are separated by 11 nucleotidesRS_RS10205 and RS_RS10210 are separated by 30 nucleotides RS_RS10195: RS_RS10195 - urease subunit alpha, at 2,206,070 to 2,207,788 _RS10195 RS_RS10200: RS_RS10200 - urease subunit beta, at 2,207,805 to 2,208,110 _RS10200 RS_RS10205: RS_RS10205 - urease accessory protein UreJ, at 2,208,122 to 2,208,739 _RS10205 RS_RS10210: RS_RS10210 - urease subunit gamma, at 2,208,770 to 2,209,072 _RS10210 Position (kb) 2207 2208 2209Strain fitness (log2 ratio) -1 0 1at 2206.975 kb on - strand, within RS_RS10195at 2206.975 kb on - strand, within RS_RS10195at 2207.289 kb on + strand, within RS_RS10195at 2207.383 kb on + strand, within RS_RS10195at 2207.383 kb on + strand, within RS_RS10195at 2207.389 kb on + strand, within RS_RS10195at 2207.670 kb on + strandat 2208.901 kb on - strand, within RS_RS10210at 2208.901 kb on - strand, within RS_RS10210at 2209.084 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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2,206,975 - RS_RS10195 0.53 -0.6
2,206,975 - RS_RS10195 0.53 +0.2
2,207,289 + RS_RS10195 0.71 -0.5
2,207,383 + RS_RS10195 0.76 +0.2
2,207,383 + RS_RS10195 0.76 +0.5
2,207,389 + RS_RS10195 0.77 -1.2
2,207,670 + +0.7
2,208,901 - RS_RS10210 0.43 +1.5
2,208,901 - RS_RS10210 0.43 -0.5
2,209,084 + -0.5

Or see this region's nucleotide sequence