Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07735

Experiment: R2A with ammonium iron(II) sulfate 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with ammonium iron(II) sulfate 2.5 mM
1,680,931	+				-3.7
1,680,931	+				-0.4
1,680,931	+				-1.0
1,680,931	+				-1.7
1,680,931	+				-1.7
1,680,931	+				-0.5
1,680,931	+				-0.3
1,680,931	+				-0.8
1,680,931	+				+0.6
1,680,931	+				-2.1
1,680,931	+				-2.0
1,680,931	+				+0.3
1,680,931	+				-1.5
1,680,931	+				-0.4
1,680,931	+				-0.6
1,680,931	+				-1.0
1,680,931	+				-1.8
1,680,932	-				+0.4
1,680,932	-				-1.4
1,680,932	-				+0.4
1,680,932	-				-0.6
1,680,932	-				-2.0
1,680,932	-				+0.3
1,680,932	-				+0.3
1,680,935	+				+0.2
1,680,935	+				+0.1
1,680,935	+				-0.4
1,680,935	+				-0.6
1,680,935	+				-0.6
1,680,935	+				+0.1
1,680,935	+				+0.9
1,680,935	+				-0.1
1,680,935	+				-2.1
1,680,935	+				-0.5
1,680,935	+				-1.1
1,680,935	+				+0.9
1,680,935	+				-1.1
1,680,935	+				+0.3
1,680,935	+				-0.9
1,680,935	+				+0.3
1,680,935	+				+0.0
1,680,935	+				-0.8
1,680,935	+				+0.5
1,680,935	+				-1.3
1,680,935	+				-1.3
1,680,935	+				-0.5
1,680,935	+				-0.7
1,680,935	+				+0.4
1,680,935	+				-2.4
1,680,935	+				-0.6
1,680,935	+				+1.3
1,680,935	+				-1.9
1,680,935	+				-0.7
1,680,935	+				-1.2
1,680,935	+				-0.8
1,680,935	+				-0.3
1,680,935	+				+0.9
1,680,935	+				-2.0
1,680,935	+				-0.8
1,680,935	+				-1.8
1,680,935	+				-0.5
1,680,935	+				-1.1
1,680,935	+				-1.3
1,680,935	+				-1.7
1,680,936	-				+0.2
1,680,936	-				-2.1
1,680,936	-				-0.5
1,680,936	-				-0.2
1,680,936	-				-0.2
1,680,936	-				-1.3
1,680,936	-				+0.7
1,680,936	-				-1.1
1,680,936	-				+0.2
1,680,936	-				+1.2
1,680,936	-				+2.0
1,680,936	-				-0.7
1,680,936	-				-0.6
1,680,936	-				+0.3
1,680,936	-				-0.1
1,680,936	-				-1.4
1,680,936	-				+0.1
1,680,936	-				-0.7
1,680,936	-				-1.0
1,680,936	-				+0.3
1,680,936	-				-1.6
1,680,936	-				-1.3
1,680,936	-				+0.7
1,680,936	-				-2.1
1,680,936	-				-1.7
1,680,936	-				+0.9
1,680,936	-				-0.3
1,680,936	-				+1.9
1,680,936	-				-0.5
1,680,936	-				-0.2
1,680,936	-				-1.3
1,680,936	-				-0.8
1,680,936	-				+0.0
1,680,936	-				-0.1
1,680,936	-				+1.6
1,680,936	-				-1.1
1,680,936	-				-0.0
1,680,936	-				-0.5
1,681,022	+				+0.9
1,681,022	+				+1.0
1,681,022	+				-1.7
1,681,022	+				+0.7
1,681,022	+				+1.9
1,681,022	+				-0.7
1,681,022	+				-1.5
1,681,022	+				-1.8
1,681,023	-				+0.9
1,681,023	-				-1.0
1,681,023	-				-1.3
1,681,023	-				-0.0
1,681,023	-				-0.7
1,681,023	-				+0.4
1,681,023	-				-1.6
1,681,241	+		LRK54_RS07730	0.28	+0.9
1,681,241	+		LRK54_RS07730	0.28	-0.5
1,681,241	+		LRK54_RS07730	0.28	-2.7
1,681,241	+		LRK54_RS07730	0.28	+0.4
1,681,241	+		LRK54_RS07730	0.28	+2.6
1,681,241	+		LRK54_RS07730	0.28	-0.6
1,681,241	+		LRK54_RS07730	0.28	+1.1
1,681,242	-		LRK54_RS07730	0.29	-1.5
1,681,242	-		LRK54_RS07730	0.29	-0.7
1,681,242	-		LRK54_RS07730	0.29	+1.9
1,681,242	-		LRK54_RS07730	0.29	-0.5
1,681,242	-		LRK54_RS07730	0.29	+0.0
1,681,242	-		LRK54_RS07730	0.29	-0.8
1,681,242	-		LRK54_RS07730	0.29	+0.0
1,681,242	-		LRK54_RS07730	0.29	-0.3
1,681,242	-		LRK54_RS07730	0.29	+1.2
1,681,242	-		LRK54_RS07730	0.29	+0.5
1,681,242	-		LRK54_RS07730	0.29	-0.2
1,681,242	-		LRK54_RS07730	0.29	-0.5
1,681,242	-		LRK54_RS07730	0.29	-2.6
1,681,242	-		LRK54_RS07730	0.29	-1.1
1,681,305	-		LRK54_RS07730	0.36	-1.1
1,681,305	-		LRK54_RS07730	0.36	+0.9
1,681,305	-		LRK54_RS07730	0.36	-0.5
1,681,352	+		LRK54_RS07730	0.41	-1.1
1,681,352	+		LRK54_RS07730	0.41	+0.0
1,681,353	-		LRK54_RS07730	0.41	+0.3
1,681,422	+		LRK54_RS07730	0.49	+1.3
1,681,422	+		LRK54_RS07730	0.49	+1.0
1,681,422	+		LRK54_RS07730	0.49	-0.6
1,681,423	-		LRK54_RS07730	0.49	-2.7
1,681,423	-		LRK54_RS07730	0.49	-0.4
1,681,423	-		LRK54_RS07730	0.49	-0.0
1,681,469	+		LRK54_RS07730	0.55	-1.0
1,681,470	-		LRK54_RS07730	0.55	-0.6
1,681,616	+		LRK54_RS07730	0.72	-1.8
1,681,616	+		LRK54_RS07730	0.72	+0.1
1,681,616	+		LRK54_RS07730	0.72	+0.4
1,681,616	+		LRK54_RS07730	0.72	-0.5
1,681,616	+		LRK54_RS07730	0.72	-1.6
1,681,617	-		LRK54_RS07730	0.72	+1.7
1,681,617	-		LRK54_RS07730	0.72	+1.1
1,681,617	-		LRK54_RS07730	0.72	-1.3
1,681,617	-		LRK54_RS07730	0.72	+1.9
1,681,617	-		LRK54_RS07730	0.72	+1.2
1,681,617	-		LRK54_RS07730	0.72	-1.6
1,681,748	+		LRK54_RS07730	0.87	+0.1
1,681,748	+		LRK54_RS07730	0.87	-0.3
1,681,748	+		LRK54_RS07730	0.87	+0.5
1,681,748	+		LRK54_RS07730	0.87	+1.1
1,681,805	+				-0.3
1,681,805	+				-1.1
1,681,805	+				-0.7
1,681,805	+				-0.7
1,681,805	+				-0.1
1,681,805	+				+0.3
1,681,805	+				+0.3
1,681,805	+				+1.7
1,681,805	+				-0.1
1,681,805	+				+0.3
1,681,805	+				+0.3
1,681,805	+				+1.4
1,681,805	+				+0.6
1,681,805	+				+1.0
1,681,805	+				+0.5
1,681,805	+				-0.8
1,681,806	-				-0.0
1,681,806	-				-2.7
1,681,806	-				+0.9
1,681,806	-				-0.5
1,681,806	-				-0.1
1,681,806	-				-0.1
1,681,806	-				+0.0
1,681,806	-				-0.6
1,681,806	-				-0.8
1,681,806	-				-0.6
1,681,806	-				-0.5
1,681,806	-				+0.1
1,681,806	-				-0.2
1,681,806	-				-0.5
1,681,950	+		LRK54_RS07735	0.13	-2.5
1,681,950	+		LRK54_RS07735	0.13	-2.0
1,681,950	+		LRK54_RS07735	0.13	-2.0
1,681,950	+		LRK54_RS07735	0.13	-3.0
1,681,950	+		LRK54_RS07735	0.13	-1.1
1,681,950	+		LRK54_RS07735	0.13	-0.6
1,681,950	+		LRK54_RS07735	0.13	-0.7
1,681,950	+		LRK54_RS07735	0.13	-0.5
1,681,950	+		LRK54_RS07735	0.13	-0.7
1,681,950	+		LRK54_RS07735	0.13	-1.6
1,681,950	+		LRK54_RS07735	0.13	-0.3
1,681,950	+		LRK54_RS07735	0.13	+0.3
1,681,950	+		LRK54_RS07735	0.13	-1.1
1,681,950	+		LRK54_RS07735	0.13	-0.5
1,681,950	+		LRK54_RS07735	0.13	-0.7
1,681,950	+		LRK54_RS07735	0.13	-0.2
1,681,950	+		LRK54_RS07735	0.13	-3.8
1,681,950	+		LRK54_RS07735	0.13	-1.6
1,681,950	+		LRK54_RS07735	0.13	-0.2
1,681,950	+		LRK54_RS07735	0.13	-2.3
1,681,950	+		LRK54_RS07735	0.13	-2.4
1,681,950	+		LRK54_RS07735	0.13	-2.3
1,681,950	+		LRK54_RS07735	0.13	-1.5
1,681,951	-		LRK54_RS07735	0.13	-0.5
1,681,951	-		LRK54_RS07735	0.13	-0.5
1,681,951	-		LRK54_RS07735	0.13	+0.4
1,681,951	-		LRK54_RS07735	0.13	-0.0
1,681,951	-		LRK54_RS07735	0.13	+0.3
1,681,951	-		LRK54_RS07735	0.13	-2.8
1,681,951	-		LRK54_RS07735	0.13	-1.7
1,681,951	-		LRK54_RS07735	0.13	-2.4
1,681,951	-		LRK54_RS07735	0.13	+0.4
1,681,951	-		LRK54_RS07735	0.13	-1.5
1,681,951	-		LRK54_RS07735	0.13	-0.3
1,681,951	-		LRK54_RS07735	0.13	+0.5
1,681,951	-		LRK54_RS07735	0.13	-0.7
1,681,951	-		LRK54_RS07735	0.13	+0.2
1,681,951	-		LRK54_RS07735	0.13	-0.4
1,681,951	-		LRK54_RS07735	0.13	-0.2
1,681,951	-		LRK54_RS07735	0.13	-1.0
1,681,951	-		LRK54_RS07735	0.13	+0.6
1,681,951	-		LRK54_RS07735	0.13	-1.8
1,681,951	-		LRK54_RS07735	0.13	+0.9
1,681,951	-		LRK54_RS07735	0.13	-1.4
1,681,951	-		LRK54_RS07735	0.13	-0.6
1,681,951	-		LRK54_RS07735	0.13	+0.4
1,681,951	-		LRK54_RS07735	0.13	-2.5
1,681,951	-		LRK54_RS07735	0.13	-1.0
1,681,951	-		LRK54_RS07735	0.13	+1.9
1,681,951	-		LRK54_RS07735	0.13	-0.7
1,681,951	-		LRK54_RS07735	0.13	-0.3
1,681,951	-		LRK54_RS07735	0.13	-0.7
1,681,951	-		LRK54_RS07735	0.13	-1.6
1,681,951	-		LRK54_RS07735	0.13	-2.0
1,681,959	+		LRK54_RS07735	0.16	-0.1
1,681,959	+		LRK54_RS07735	0.16	-1.3
1,681,959	+		LRK54_RS07735	0.16	-0.7
1,681,959	+		LRK54_RS07735	0.16	-0.7
1,681,959	+		LRK54_RS07735	0.16	-0.7
1,681,960	-		LRK54_RS07735	0.16	-1.1
1,681,960	-		LRK54_RS07735	0.16	+0.4
1,681,960	-		LRK54_RS07735	0.16	-1.7
1,681,960	-		LRK54_RS07735	0.16	-1.4
1,681,960	-		LRK54_RS07735	0.16	-1.5
1,681,960	-		LRK54_RS07735	0.16	-0.7
1,682,004	+		LRK54_RS07735	0.28	-1.3
1,682,004	+		LRK54_RS07735	0.28	-1.5
1,682,303	+				-0.6
1,682,303	+				+0.7
1,682,303	+				-0.0
1,682,303	+				-1.0
1,682,304	-				+0.3
1,682,304	-				+0.9
1,682,304	-				-2.0
1,682,304	-				+1.3
1,682,325	+				-0.5
1,682,326	-				-0.4
1,682,326	-				-1.0
1,682,332	-				+0.9
1,682,336	+				-0.4
1,682,349	+				-0.8
1,682,394	+				-1.6
1,682,394	+				+0.7
1,682,394	+				+0.3
1,682,394	+				-1.0
1,682,515	-				+0.5
1,682,515	-				-0.0
1,682,515	-				-0.8
1,682,515	-				-1.2
1,682,515	-				-0.0
1,682,515	-				-0.3
1,682,515	-				+2.4
1,682,754	+		LRK54_RS07740	0.22	-0.5
1,682,754	+		LRK54_RS07740	0.22	-0.1
1,682,754	+		LRK54_RS07740	0.22	+1.6
1,682,754	+		LRK54_RS07740	0.22	-1.1
1,682,754	+		LRK54_RS07740	0.22	+0.3
1,682,754	+		LRK54_RS07740	0.22	+1.0
1,682,754	+		LRK54_RS07740	0.22	-0.1
1,682,755	-		LRK54_RS07740	0.22	+3.9
1,682,755	-		LRK54_RS07740	0.22	+0.3
1,682,755	-		LRK54_RS07740	0.22	-1.5
1,682,755	-		LRK54_RS07740	0.22	+0.2
1,682,760	+		LRK54_RS07740	0.23	-0.3
1,682,760	+		LRK54_RS07740	0.23	-0.3
1,682,760	+		LRK54_RS07740	0.23	+0.9
1,682,760	+		LRK54_RS07740	0.23	-1.7
1,682,760	+		LRK54_RS07740	0.23	-1.0
1,682,761	-		LRK54_RS07740	0.23	-0.3
1,682,761	-		LRK54_RS07740	0.23	+2.4
1,682,761	-		LRK54_RS07740	0.23	+0.3
1,682,761	-		LRK54_RS07740	0.23	+0.3
1,682,761	-		LRK54_RS07740	0.23	+0.9
1,682,761	-		LRK54_RS07740	0.23	-0.1
1,682,761	-		LRK54_RS07740	0.23	-0.9
1,682,761	-		LRK54_RS07740	0.23	+0.7
1,682,761	-		LRK54_RS07740	0.23	-0.8
1,682,761	-		LRK54_RS07740	0.23	-0.3
1,682,877	+		LRK54_RS07740	0.32	+0.3
1,682,877	+		LRK54_RS07740	0.32	-0.9
1,682,877	+		LRK54_RS07740	0.32	+0.4
1,682,877	+		LRK54_RS07740	0.32	-0.2
1,682,877	+		LRK54_RS07740	0.32	-0.8
1,682,877	+		LRK54_RS07740	0.32	-1.0
1,682,878	-		LRK54_RS07740	0.32	-1.5
1,682,878	-		LRK54_RS07740	0.32	+0.5
1,682,878	-		LRK54_RS07740	0.32	+0.6
1,682,953	-		LRK54_RS07740	0.38	+1.2
1,682,953	-		LRK54_RS07740	0.38	-3.7
1,683,021	+		LRK54_RS07740	0.43	+0.5
1,683,021	+		LRK54_RS07740	0.43	-0.3
1,683,021	+		LRK54_RS07740	0.43	-1.5
1,683,021	+		LRK54_RS07740	0.43	+0.5
1,683,021	+		LRK54_RS07740	0.43	+1.9
1,683,021	+		LRK54_RS07740	0.43	-1.1
1,683,021	+		LRK54_RS07740	0.43	-0.5
1,683,021	+		LRK54_RS07740	0.43	+2.9
1,683,021	+		LRK54_RS07740	0.43	+0.1
1,683,021	+		LRK54_RS07740	0.43	-0.6
1,683,021	+		LRK54_RS07740	0.43	-0.1
1,683,021	+		LRK54_RS07740	0.43	-0.8
1,683,021	+		LRK54_RS07740	0.43	-0.3
1,683,021	+		LRK54_RS07740	0.43	+1.2
1,683,021	+		LRK54_RS07740	0.43	+0.3
1,683,021	+		LRK54_RS07740	0.43	+1.9
1,683,021	+		LRK54_RS07740	0.43	-0.3
1,683,021	+		LRK54_RS07740	0.43	+1.2
1,683,021	+		LRK54_RS07740	0.43	-0.5
1,683,021	+		LRK54_RS07740	0.43	+0.4
1,683,021	+		LRK54_RS07740	0.43	-1.3
1,683,021	+		LRK54_RS07740	0.43	+0.9
1,683,021	+		LRK54_RS07740	0.43	-0.2
1,683,021	+		LRK54_RS07740	0.43	-0.6
1,683,021	+		LRK54_RS07740	0.43	+0.3
1,683,021	+		LRK54_RS07740	0.43	-0.1
1,683,021	+		LRK54_RS07740	0.43	+1.0
1,683,021	+		LRK54_RS07740	0.43	-0.5
1,683,022	-		LRK54_RS07740	0.43	-1.2
1,683,022	-		LRK54_RS07740	0.43	-1.6
1,683,022	-		LRK54_RS07740	0.43	+0.1
1,683,022	-		LRK54_RS07740	0.43	-1.1
1,683,022	-		LRK54_RS07740	0.43	-0.3
1,683,022	-		LRK54_RS07740	0.43	+0.7
1,683,022	-		LRK54_RS07740	0.43	+1.0
1,683,022	-		LRK54_RS07740	0.43	+0.1
1,683,022	-		LRK54_RS07740	0.43	-0.7
1,683,022	-		LRK54_RS07740	0.43	-1.2
1,683,022	-		LRK54_RS07740	0.43	+1.1
1,683,022	-		LRK54_RS07740	0.43	-0.1
1,683,022	-		LRK54_RS07740	0.43	-1.7
1,683,022	-		LRK54_RS07740	0.43	-1.0
1,683,022	-		LRK54_RS07740	0.43	-0.1
1,683,022	-		LRK54_RS07740	0.43	-0.2
1,683,022	-		LRK54_RS07740	0.43	-0.5
1,683,022	-		LRK54_RS07740	0.43	-0.1
1,683,022	-		LRK54_RS07740	0.43	-1.7
1,683,022	-		LRK54_RS07740	0.43	-0.7
1,683,022	-		LRK54_RS07740	0.43	-0.0
1,683,022	-		LRK54_RS07740	0.43	+0.9
1,683,022	-		LRK54_RS07740	0.43	+2.0
1,683,038	+		LRK54_RS07740	0.44	-0.1
1,683,039	+		LRK54_RS07740	0.44	-0.1
1,683,039	+		LRK54_RS07740	0.44	-0.6
1,683,039	+		LRK54_RS07740	0.44	+0.1
1,683,039	+		LRK54_RS07740	0.44	-1.7
1,683,039	+		LRK54_RS07740	0.44	+0.7
1,683,039	+		LRK54_RS07740	0.44	-1.1
1,683,039	+		LRK54_RS07740	0.44	-2.0
1,683,039	+		LRK54_RS07740	0.44	-3.4
1,683,039	+		LRK54_RS07740	0.44	-0.5
1,683,039	+		LRK54_RS07740	0.44	-0.1
1,683,039	+		LRK54_RS07740	0.44	-0.0
1,683,039	+		LRK54_RS07740	0.44	+1.4
1,683,039	+		LRK54_RS07740	0.44	-0.1
1,683,039	+		LRK54_RS07740	0.44	+0.0
1,683,039	+		LRK54_RS07740	0.44	+0.2
1,683,039	+		LRK54_RS07740	0.44	-0.2
1,683,039	+		LRK54_RS07740	0.44	+0.3
1,683,039	+		LRK54_RS07740	0.44	+0.1
1,683,039	+		LRK54_RS07740	0.44	-0.1
1,683,040	-		LRK54_RS07740	0.44	-1.8
1,683,040	-		LRK54_RS07740	0.44	+1.9
1,683,040	-		LRK54_RS07740	0.44	-1.1
1,683,040	-		LRK54_RS07740	0.44	-0.6
1,683,040	-		LRK54_RS07740	0.44	+2.3
1,683,040	-		LRK54_RS07740	0.44	-0.6
1,683,040	-		LRK54_RS07740	0.44	-0.1
1,683,040	-		LRK54_RS07740	0.44	+0.3
1,683,040	-		LRK54_RS07740	0.44	+2.2
1,683,040	-		LRK54_RS07740	0.44	+1.3
1,683,040	-		LRK54_RS07740	0.44	+0.4
1,683,040	-		LRK54_RS07740	0.44	+1.4