Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS02225

Experiment: R2A with ammonium iron(II) sulfate 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS02220 and LRK54_RS02225 are separated by 279 nucleotidesLRK54_RS02225 and LRK54_RS02230 are separated by 172 nucleotides LRK54_RS02220: LRK54_RS02220 - GGDEF domain-containing protein, at 483,314 to 485,170 _RS02220 LRK54_RS02225: LRK54_RS02225 - tRNA-Thr, at 485,450 to 485,525 _RS02225 LRK54_RS02230: LRK54_RS02230 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 485,698 to 486,660 _RS02230 Position (kb) 485 486Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 484.560 kb on + strand, within LRK54_RS02220at 484.560 kb on + strand, within LRK54_RS02220at 484.560 kb on + strand, within LRK54_RS02220at 484.561 kb on - strand, within LRK54_RS02220at 484.578 kb on + strand, within LRK54_RS02220at 484.578 kb on + strand, within LRK54_RS02220at 484.578 kb on + strand, within LRK54_RS02220at 484.578 kb on + strand, within LRK54_RS02220at 484.579 kb on - strand, within LRK54_RS02220at 484.579 kb on - strand, within LRK54_RS02220at 484.596 kb on + strand, within LRK54_RS02220at 484.596 kb on + strand, within LRK54_RS02220at 484.596 kb on + strand, within LRK54_RS02220at 484.596 kb on + strand, within LRK54_RS02220at 484.596 kb on + strand, within LRK54_RS02220at 484.596 kb on + strand, within LRK54_RS02220at 484.596 kb on + strand, within LRK54_RS02220at 484.596 kb on + strand, within LRK54_RS02220at 484.596 kb on + strand, within LRK54_RS02220at 484.596 kb on + strand, within LRK54_RS02220at 484.596 kb on + strand, within LRK54_RS02220at 484.596 kb on + strand, within LRK54_RS02220at 484.597 kb on - strand, within LRK54_RS02220at 484.597 kb on - strand, within LRK54_RS02220at 484.597 kb on - strand, within LRK54_RS02220at 484.597 kb on - strand, within LRK54_RS02220at 484.597 kb on - strand, within LRK54_RS02220at 484.597 kb on - strand, within LRK54_RS02220at 484.597 kb on - strand, within LRK54_RS02220at 484.597 kb on - strand, within LRK54_RS02220at 484.597 kb on - strand, within LRK54_RS02220at 484.656 kb on + strand, within LRK54_RS02220at 484.656 kb on + strand, within LRK54_RS02220at 484.656 kb on + strand, within LRK54_RS02220at 484.657 kb on - strand, within LRK54_RS02220at 484.657 kb on - strand, within LRK54_RS02220at 484.657 kb on - strand, within LRK54_RS02220at 484.657 kb on - strand, within LRK54_RS02220at 484.657 kb on - strand, within LRK54_RS02220at 484.797 kb on + strand, within LRK54_RS02220at 484.797 kb on + strand, within LRK54_RS02220at 484.797 kb on + strand, within LRK54_RS02220at 484.797 kb on + strand, within LRK54_RS02220at 484.797 kb on + strand, within LRK54_RS02220at 484.798 kb on - strand, within LRK54_RS02220at 484.798 kb on - strand, within LRK54_RS02220at 484.798 kb on - strand, within LRK54_RS02220at 484.798 kb on - strand, within LRK54_RS02220at 484.839 kb on + strand, within LRK54_RS02220at 484.839 kb on + strand, within LRK54_RS02220at 484.840 kb on - strand, within LRK54_RS02220at 484.840 kb on - strand, within LRK54_RS02220at 484.920 kb on + strand, within LRK54_RS02220at 484.920 kb on + strand, within LRK54_RS02220at 484.920 kb on + strand, within LRK54_RS02220at 484.920 kb on + strand, within LRK54_RS02220at 484.921 kb on - strand, within LRK54_RS02220at 484.921 kb on - strand, within LRK54_RS02220at 484.921 kb on - strand, within LRK54_RS02220at 484.921 kb on - strand, within LRK54_RS02220at 484.921 kb on - strand, within LRK54_RS02220at 484.921 kb on - strand, within LRK54_RS02220at 484.921 kb on - strand, within LRK54_RS02220at 484.921 kb on - strand, within LRK54_RS02220at 484.921 kb on - strand, within LRK54_RS02220at 484.926 kb on + strand, within LRK54_RS02220at 484.965 kb on + strand, within LRK54_RS02220at 484.965 kb on + strand, within LRK54_RS02220at 484.965 kb on + strand, within LRK54_RS02220at 484.965 kb on + strand, within LRK54_RS02220at 484.965 kb on + strand, within LRK54_RS02220at 484.965 kb on + strand, within LRK54_RS02220at 484.965 kb on + strand, within LRK54_RS02220at 484.965 kb on + strand, within LRK54_RS02220at 484.965 kb on + strand, within LRK54_RS02220at 484.965 kb on + strand, within LRK54_RS02220at 484.966 kb on - strand, within LRK54_RS02220at 484.966 kb on - strand, within LRK54_RS02220at 484.966 kb on - strand, within LRK54_RS02220at 484.966 kb on - strand, within LRK54_RS02220at 484.966 kb on - strand, within LRK54_RS02220at 484.966 kb on - strand, within LRK54_RS02220at 484.966 kb on - strand, within LRK54_RS02220at 484.966 kb on - strand, within LRK54_RS02220at 484.966 kb on - strand, within LRK54_RS02220at 484.966 kb on - strand, within LRK54_RS02220at 484.966 kb on - strand, within LRK54_RS02220at 484.966 kb on - strand, within LRK54_RS02220at 484.971 kb on + strand, within LRK54_RS02220at 484.971 kb on + strand, within LRK54_RS02220at 484.971 kb on + strand, within LRK54_RS02220at 484.971 kb on + strand, within LRK54_RS02220at 484.971 kb on + strand, within LRK54_RS02220at 484.971 kb on + strand, within LRK54_RS02220at 484.971 kb on + strand, within LRK54_RS02220at 484.971 kb on + strand, within LRK54_RS02220at 484.971 kb on + strand, within LRK54_RS02220at 484.971 kb on + strand, within LRK54_RS02220at 484.972 kb on - strand, within LRK54_RS02220at 484.972 kb on - strand, within LRK54_RS02220at 484.972 kb on - strand, within LRK54_RS02220at 484.972 kb on - strand, within LRK54_RS02220at 484.972 kb on - strand, within LRK54_RS02220at 484.972 kb on - strand, within LRK54_RS02220at 484.972 kb on - strand, within LRK54_RS02220at 484.972 kb on - strand, within LRK54_RS02220at 484.972 kb on - strand, within LRK54_RS02220at 484.972 kb on - strand, within LRK54_RS02220at 484.972 kb on - strand, within LRK54_RS02220at 484.972 kb on - strand, within LRK54_RS02220at 484.972 kb on - strand, within LRK54_RS02220at 484.977 kb on + strand, within LRK54_RS02220at 484.977 kb on + strand, within LRK54_RS02220at 484.977 kb on + strand, within LRK54_RS02220at 484.977 kb on + strand, within LRK54_RS02220at 484.977 kb on + strand, within LRK54_RS02220at 484.978 kb on - strand, within LRK54_RS02220at 484.993 kb on - strandat 485.068 kb on + strandat 485.069 kb on - strandat 485.204 kb on + strandat 485.204 kb on + strandat 485.204 kb on + strandat 485.204 kb on + strandat 485.204 kb on + strandat 485.204 kb on + strandat 485.204 kb on + strandat 485.204 kb on + strandat 485.204 kb on + strandat 485.204 kb on + strandat 485.204 kb on + strandat 485.204 kb on + strandat 485.204 kb on + strandat 485.204 kb on + strandat 485.204 kb on + strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.205 kb on - strandat 485.432 kb on + strandat 485.677 kb on + strandat 485.677 kb on + strandat 485.677 kb on + strandat 485.677 kb on + strandat 485.677 kb on + strandat 485.678 kb on - strandat 485.678 kb on - strandat 485.678 kb on - strandat 485.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with ammonium iron(II) sulfate 2.5 mM
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484,560 + LRK54_RS02220 0.67 -0.1
484,560 + LRK54_RS02220 0.67 +1.1
484,560 + LRK54_RS02220 0.67 -0.0
484,561 - LRK54_RS02220 0.67 -0.5
484,578 + LRK54_RS02220 0.68 +0.8
484,578 + LRK54_RS02220 0.68 +1.8
484,578 + LRK54_RS02220 0.68 -1.0
484,578 + LRK54_RS02220 0.68 +0.7
484,579 - LRK54_RS02220 0.68 -1.6
484,579 - LRK54_RS02220 0.68 -1.2
484,596 + LRK54_RS02220 0.69 +0.2
484,596 + LRK54_RS02220 0.69 -1.5
484,596 + LRK54_RS02220 0.69 +0.7
484,596 + LRK54_RS02220 0.69 +0.7
484,596 + LRK54_RS02220 0.69 +0.8
484,596 + LRK54_RS02220 0.69 +0.6
484,596 + LRK54_RS02220 0.69 -0.5
484,596 + LRK54_RS02220 0.69 -0.3
484,596 + LRK54_RS02220 0.69 +1.8
484,596 + LRK54_RS02220 0.69 -0.2
484,596 + LRK54_RS02220 0.69 -0.2
484,596 + LRK54_RS02220 0.69 +0.6
484,597 - LRK54_RS02220 0.69 +0.7
484,597 - LRK54_RS02220 0.69 +0.8
484,597 - LRK54_RS02220 0.69 -0.1
484,597 - LRK54_RS02220 0.69 +0.3
484,597 - LRK54_RS02220 0.69 +0.8
484,597 - LRK54_RS02220 0.69 +0.2
484,597 - LRK54_RS02220 0.69 +1.2
484,597 - LRK54_RS02220 0.69 +1.3
484,597 - LRK54_RS02220 0.69 -1.9
484,656 + LRK54_RS02220 0.72 -1.3
484,656 + LRK54_RS02220 0.72 -1.9
484,656 + LRK54_RS02220 0.72 -0.4
484,657 - LRK54_RS02220 0.72 +0.2
484,657 - LRK54_RS02220 0.72 -1.5
484,657 - LRK54_RS02220 0.72 -1.0
484,657 - LRK54_RS02220 0.72 -0.2
484,657 - LRK54_RS02220 0.72 -0.8
484,797 + LRK54_RS02220 0.80 +0.8
484,797 + LRK54_RS02220 0.80 -0.3
484,797 + LRK54_RS02220 0.80 -0.7
484,797 + LRK54_RS02220 0.80 -1.6
484,797 + LRK54_RS02220 0.80 -0.8
484,798 - LRK54_RS02220 0.80 +1.4
484,798 - LRK54_RS02220 0.80 -0.7
484,798 - LRK54_RS02220 0.80 +0.5
484,798 - LRK54_RS02220 0.80 +0.8
484,839 + LRK54_RS02220 0.82 -1.9
484,839 + LRK54_RS02220 0.82 -0.8
484,840 - LRK54_RS02220 0.82 -1.6
484,840 - LRK54_RS02220 0.82 +1.8
484,920 + LRK54_RS02220 0.86 +0.0
484,920 + LRK54_RS02220 0.86 -0.2
484,920 + LRK54_RS02220 0.86 +0.5
484,920 + LRK54_RS02220 0.86 -1.3
484,921 - LRK54_RS02220 0.87 +0.1
484,921 - LRK54_RS02220 0.87 -0.8
484,921 - LRK54_RS02220 0.87 +1.3
484,921 - LRK54_RS02220 0.87 -0.3
484,921 - LRK54_RS02220 0.87 -1.5
484,921 - LRK54_RS02220 0.87 +0.1
484,921 - LRK54_RS02220 0.87 -1.8
484,921 - LRK54_RS02220 0.87 -0.1
484,921 - LRK54_RS02220 0.87 -0.4
484,926 + LRK54_RS02220 0.87 +0.9
484,965 + LRK54_RS02220 0.89 +0.1
484,965 + LRK54_RS02220 0.89 +0.5
484,965 + LRK54_RS02220 0.89 +0.2
484,965 + LRK54_RS02220 0.89 -0.3
484,965 + LRK54_RS02220 0.89 +1.1
484,965 + LRK54_RS02220 0.89 +0.4
484,965 + LRK54_RS02220 0.89 -2.2
484,965 + LRK54_RS02220 0.89 -0.2
484,965 + LRK54_RS02220 0.89 +0.7
484,965 + LRK54_RS02220 0.89 +0.7
484,966 - LRK54_RS02220 0.89 +0.2
484,966 - LRK54_RS02220 0.89 +0.5
484,966 - LRK54_RS02220 0.89 -3.1
484,966 - LRK54_RS02220 0.89 -1.2
484,966 - LRK54_RS02220 0.89 -0.1
484,966 - LRK54_RS02220 0.89 -0.8
484,966 - LRK54_RS02220 0.89 +0.2
484,966 - LRK54_RS02220 0.89 -1.0
484,966 - LRK54_RS02220 0.89 -0.7
484,966 - LRK54_RS02220 0.89 -0.4
484,966 - LRK54_RS02220 0.89 +0.8
484,966 - LRK54_RS02220 0.89 -0.5
484,971 + LRK54_RS02220 0.89 -1.9
484,971 + LRK54_RS02220 0.89 -1.3
484,971 + LRK54_RS02220 0.89 -0.4
484,971 + LRK54_RS02220 0.89 +1.1
484,971 + LRK54_RS02220 0.89 +1.8
484,971 + LRK54_RS02220 0.89 +0.7
484,971 + LRK54_RS02220 0.89 -0.2
484,971 + LRK54_RS02220 0.89 +0.2
484,971 + LRK54_RS02220 0.89 +0.8
484,971 + LRK54_RS02220 0.89 -0.5
484,972 - LRK54_RS02220 0.89 -2.8
484,972 - LRK54_RS02220 0.89 -0.1
484,972 - LRK54_RS02220 0.89 -1.0
484,972 - LRK54_RS02220 0.89 -0.8
484,972 - LRK54_RS02220 0.89 -0.5
484,972 - LRK54_RS02220 0.89 -1.5
484,972 - LRK54_RS02220 0.89 +0.1
484,972 - LRK54_RS02220 0.89 -0.2
484,972 - LRK54_RS02220 0.89 +1.8
484,972 - LRK54_RS02220 0.89 -0.5
484,972 - LRK54_RS02220 0.89 +0.2
484,972 - LRK54_RS02220 0.89 -2.2
484,972 - LRK54_RS02220 0.89 -0.5
484,977 + LRK54_RS02220 0.90 -1.3
484,977 + LRK54_RS02220 0.90 +0.3
484,977 + LRK54_RS02220 0.90 +0.9
484,977 + LRK54_RS02220 0.90 -2.3
484,977 + LRK54_RS02220 0.90 +0.4
484,978 - LRK54_RS02220 0.90 -1.0
484,993 - -0.4
485,068 + -0.1
485,069 - +0.2
485,204 + -1.0
485,204 + -0.6
485,204 + -0.6
485,204 + +0.2
485,204 + -2.6
485,204 + -0.4
485,204 + -1.0
485,204 + -1.6
485,204 + -0.4
485,204 + -0.8
485,204 + -1.0
485,204 + -2.1
485,204 + +0.2
485,204 + -0.5
485,204 + +0.5
485,205 - -0.8
485,205 - -0.5
485,205 - +0.2
485,205 - -2.0
485,205 - -0.0
485,205 - +0.4
485,205 - -0.1
485,205 - +0.0
485,205 - -0.1
485,205 - -0.7
485,205 - -1.3
485,205 - +0.1
485,205 - -1.3
485,205 - -2.0
485,205 - -0.5
485,205 - -0.2
485,205 - -0.4
485,205 - -1.4
485,205 - -1.8
485,205 - -0.4
485,205 - +1.1
485,432 + -0.1
485,677 + -0.9
485,677 + -1.0
485,677 + -0.4
485,677 + -0.9
485,677 + -0.8
485,678 - -0.5
485,678 - -0.1
485,678 - +1.0
485,678 - -0.1

Or see this region's nucleotide sequence