Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0685

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0683 and Ga0059261_0684 are separated by 93 nucleotidesGa0059261_0684 and Ga0059261_0685 are separated by 172 nucleotidesGa0059261_0685 and Ga0059261_0686 are separated by 156 nucleotidesGa0059261_0686 and Ga0059261_0687 are separated by 8 nucleotides Ga0059261_0683: Ga0059261_0683 - Predicted membrane protein, at 723,299 to 723,706 _0683 Ga0059261_0684: Ga0059261_0684 - Uncharacterized protein conserved in bacteria, at 723,800 to 724,174 _0684 Ga0059261_0685: Ga0059261_0685 - pyruvate kinase, at 724,347 to 725,798 _0685 Ga0059261_0686: Ga0059261_0686 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 725,955 to 726,572 _0686 Ga0059261_0687: Ga0059261_0687 - Ribosomal protein L36, at 726,581 to 726,706 _0687 Position (kb) 724 725 726Strain fitness (log2 ratio) -2 -1 0 1at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strandat 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.697 kb on - strandat 723.697 kb on - strandat 723.754 kb on + strandat 723.755 kb on - strandat 723.788 kb on + strandat 723.788 kb on + strandat 723.789 kb on - strandat 723.789 kb on - strandat 723.789 kb on - strandat 723.789 kb on - strandat 723.963 kb on + strand, within Ga0059261_0684at 723.964 kb on - strand, within Ga0059261_0684at 723.975 kb on + strand, within Ga0059261_0684at 723.975 kb on + strand, within Ga0059261_0684at 723.975 kb on + strand, within Ga0059261_0684at 723.976 kb on - strand, within Ga0059261_0684at 723.976 kb on - strand, within Ga0059261_0684at 723.976 kb on - strand, within Ga0059261_0684at 724.194 kb on + strandat 724.195 kb on - strandat 724.214 kb on - strandat 725.259 kb on + strand, within Ga0059261_0685at 725.259 kb on + strand, within Ga0059261_0685at 725.260 kb on - strand, within Ga0059261_0685at 725.882 kb on + strandat 725.882 kb on + strandat 725.882 kb on + strandat 725.882 kb on + strandat 725.883 kb on - strandat 725.883 kb on - strandat 725.937 kb on + strandat 725.937 kb on + strandat 725.937 kb on + strandat 725.937 kb on + strandat 725.938 kb on - strandat 725.938 kb on - strandat 725.938 kb on - strandat 725.939 kb on + strandat 725.939 kb on + strandat 725.939 kb on + strandat 725.940 kb on - strandat 725.940 kb on - strandat 725.940 kb on - strandat 726.051 kb on + strand, within Ga0059261_0686at 726.051 kb on + strand, within Ga0059261_0686at 726.051 kb on + strand, within Ga0059261_0686at 726.051 kb on + strand, within Ga0059261_0686at 726.051 kb on + strand, within Ga0059261_0686at 726.052 kb on - strand, within Ga0059261_0686at 726.052 kb on - strand, within Ga0059261_0686at 726.052 kb on - strand, within Ga0059261_0686at 726.052 kb on - strand, within Ga0059261_0686at 726.052 kb on - strandat 726.052 kb on - strand, within Ga0059261_0686at 726.124 kb on + strand, within Ga0059261_0686at 726.124 kb on + strand, within Ga0059261_0686at 726.124 kb on + strand, within Ga0059261_0686at 726.124 kb on + strand, within Ga0059261_0686at 726.124 kb on + strand, within Ga0059261_0686at 726.124 kb on + strand, within Ga0059261_0686at 726.124 kb on + strand, within Ga0059261_0686at 726.124 kb on + strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.125 kb on - strand, within Ga0059261_0686at 726.374 kb on - strand, within Ga0059261_0686at 726.374 kb on - strand, within Ga0059261_0686at 726.446 kb on - strand, within Ga0059261_0686at 726.503 kb on - strand, within Ga0059261_0686at 726.551 kb on + strandat 726.552 kb on - strandat 726.552 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
723,618 + Ga0059261_0683 0.78 -0.7
723,618 + Ga0059261_0683 0.78 -0.9
723,618 + Ga0059261_0683 0.78 +0.5
723,618 + -0.1
723,618 + Ga0059261_0683 0.78 +0.0
723,618 + Ga0059261_0683 0.78 -0.3
723,618 + Ga0059261_0683 0.78 -0.7
723,618 + Ga0059261_0683 0.78 -0.2
723,618 + Ga0059261_0683 0.78 -0.2
723,618 + Ga0059261_0683 0.78 +0.2
723,618 + Ga0059261_0683 0.78 -0.5
723,618 + Ga0059261_0683 0.78 -0.7
723,619 - Ga0059261_0683 0.78 +0.2
723,619 - Ga0059261_0683 0.78 -0.6
723,619 - Ga0059261_0683 0.78 -0.4
723,619 - Ga0059261_0683 0.78 +0.8
723,619 - Ga0059261_0683 0.78 +0.2
723,619 - Ga0059261_0683 0.78 -0.5
723,619 - Ga0059261_0683 0.78 -0.1
723,619 - Ga0059261_0683 0.78 -0.3
723,619 - Ga0059261_0683 0.78 -0.5
723,697 - +0.3
723,697 - -1.2
723,754 + -0.1
723,755 - -0.5
723,788 + +0.9
723,788 + -0.0
723,789 - +1.3
723,789 - -0.9
723,789 - -1.9
723,789 - +1.3
723,963 + Ga0059261_0684 0.43 +0.3
723,964 - Ga0059261_0684 0.44 -0.4
723,975 + Ga0059261_0684 0.47 -0.1
723,975 + Ga0059261_0684 0.47 +0.3
723,975 + Ga0059261_0684 0.47 +0.9
723,976 - Ga0059261_0684 0.47 -1.0
723,976 - Ga0059261_0684 0.47 +0.1
723,976 - Ga0059261_0684 0.47 +0.2
724,194 + +0.1
724,195 - -0.0
724,214 - -0.8
725,259 + Ga0059261_0685 0.63 -0.9
725,259 + Ga0059261_0685 0.63 -0.5
725,260 - Ga0059261_0685 0.63 +0.1
725,882 + -0.2
725,882 + +0.2
725,882 + +0.1
725,882 + -0.9
725,883 - +0.3
725,883 - +0.1
725,937 + +0.7
725,937 + -0.3
725,937 + -0.7
725,937 + +0.4
725,938 - +0.7
725,938 - -0.2
725,938 - -0.2
725,939 + -0.3
725,939 + -0.3
725,939 + +0.4
725,940 - -0.7
725,940 - -0.5
725,940 - +0.1
726,051 + Ga0059261_0686 0.16 +0.3
726,051 + Ga0059261_0686 0.16 +0.2
726,051 + Ga0059261_0686 0.16 -0.1
726,051 + Ga0059261_0686 0.16 +0.5
726,051 + Ga0059261_0686 0.16 -0.1
726,052 - Ga0059261_0686 0.16 -0.3
726,052 - Ga0059261_0686 0.16 +0.1
726,052 - Ga0059261_0686 0.16 +0.7
726,052 - Ga0059261_0686 0.16 -0.4
726,052 - +0.9
726,052 - Ga0059261_0686 0.16 +0.2
726,124 + Ga0059261_0686 0.27 -0.1
726,124 + Ga0059261_0686 0.27 +0.7
726,124 + Ga0059261_0686 0.27 +0.2
726,124 + Ga0059261_0686 0.27 +0.1
726,124 + Ga0059261_0686 0.27 -2.1
726,124 + Ga0059261_0686 0.27 -0.5
726,124 + Ga0059261_0686 0.27 -0.3
726,124 + Ga0059261_0686 0.27 +0.9
726,125 - Ga0059261_0686 0.28 +0.2
726,125 - Ga0059261_0686 0.28 +0.3
726,125 - Ga0059261_0686 0.28 +0.5
726,125 - Ga0059261_0686 0.28 -0.0
726,125 - Ga0059261_0686 0.28 -0.1
726,125 - Ga0059261_0686 0.28 -0.1
726,125 - Ga0059261_0686 0.28 +0.4
726,125 - Ga0059261_0686 0.28 -0.1
726,125 - Ga0059261_0686 0.28 +0.5
726,125 - Ga0059261_0686 0.28 -0.1
726,125 - Ga0059261_0686 0.28 +0.9
726,125 - Ga0059261_0686 0.28 -0.2
726,374 - Ga0059261_0686 0.68 +0.7
726,374 - Ga0059261_0686 0.68 +0.3
726,446 - Ga0059261_0686 0.79 +0.3
726,503 - Ga0059261_0686 0.89 +0.2
726,551 + -0.1
726,552 - -0.2
726,552 - -0.9

Or see this region's nucleotide sequence