Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03092

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
3,240,224	-				+0.5
3,240,287	-				+1.5
3,240,360	+				-1.6
3,240,380	+				+0.1
3,240,393	+				-0.5
3,240,398	+				+0.5
3,240,398	+				-0.2
3,240,398	+				+0.7
3,240,398	+				+0.2
3,240,401	-				-2.0
3,240,406	-				+0.1
3,240,406	-				-0.5
3,240,406	-				-1.7
3,240,464	-				-0.1
3,240,475	+				+0.1
3,240,480	+				+0.5
3,240,483	-				-0.7
3,240,488	-				+1.7
3,240,494	+				+1.7
3,240,502	-				+1.1
3,240,502	-				-1.0
3,240,505	+				+0.3
3,240,514	-				+0.7
3,240,517	+				+0.7
3,240,550	-		CCNA_03091	0.25	+0.5
3,240,640	+		CCNA_03091	0.70	+0.5
3,240,695	+				+0.3
3,240,776	+				+0.4
3,240,776	+				+0.0
3,240,776	+				+1.2
3,240,776	+				+0.5
3,240,776	+				+0.5
3,240,776	+				+0.6
3,240,784	+				+1.0
3,240,833	-				-0.3
3,240,856	-				-1.7
3,240,860	+				-1.7
3,240,871	+				+1.4
3,240,920	+				-1.2
3,240,961	-		CCNA_03092	0.12	-2.0
3,240,963	+		CCNA_03092	0.12	-0.6
3,240,969	-		CCNA_03092	0.12	+0.3
3,240,971	+		CCNA_03092	0.12	+3.3
3,241,023	+		CCNA_03092	0.16	-0.8
3,241,051	+		CCNA_03092	0.18	-1.5
3,241,079	-		CCNA_03092	0.20	-0.8
3,241,092	+		CCNA_03092	0.21	-0.6
3,241,105	-		CCNA_03092	0.22	+1.9
3,241,110	+		CCNA_03092	0.22	+0.5
3,241,117	-		CCNA_03092	0.23	+0.3
3,241,117	-		CCNA_03092	0.23	-1.8
3,241,133	-		CCNA_03092	0.24	-1.1
3,241,159	-		CCNA_03092	0.26	-2.5
3,241,181	+		CCNA_03092	0.28	+0.4
3,241,240	-		CCNA_03092	0.32	-2.1
3,241,240	-		CCNA_03092	0.32	-0.7
3,241,247	+		CCNA_03092	0.32	-0.7
3,241,247	+		CCNA_03092	0.32	-0.5
3,241,247	+		CCNA_03092	0.32	-1.3
3,241,247	+		CCNA_03092	0.32	+2.7
3,241,247	+		CCNA_03092	0.32	-0.3
3,241,254	+		CCNA_03092	0.33	-1.2
3,241,262	-		CCNA_03092	0.33	+1.7
3,241,262	-		CCNA_03092	0.33	-0.1
3,241,264	+		CCNA_03092	0.34	+0.1
3,241,281	+		CCNA_03092	0.35	-1.4
3,241,286	-		CCNA_03092	0.35	-1.0
3,241,288	+		CCNA_03092	0.35	-1.5
3,241,289	-		CCNA_03092	0.35	+0.1
3,241,317	-		CCNA_03092	0.37	+0.3
3,241,333	+		CCNA_03092	0.39	+0.5
3,241,333	+		CCNA_03092	0.39	-0.0
3,241,341	-		CCNA_03092	0.39	-0.1
3,241,341	-		CCNA_03092	0.39	-0.5
3,241,360	+		CCNA_03092	0.41	-1.8
3,241,368	+		CCNA_03092	0.41	-0.8
3,241,369	+		CCNA_03092	0.41	+1.1
3,241,457	-		CCNA_03092	0.48	-0.3
3,241,480	-		CCNA_03092	0.49	-0.5
3,241,496	+		CCNA_03092	0.50	-1.0
3,241,504	-		CCNA_03092	0.51	+0.7
3,241,504	-		CCNA_03092	0.51	+2.1
3,241,518	+		CCNA_03092	0.52	-0.7
3,241,518	+		CCNA_03092	0.52	+0.3
3,241,518	+		CCNA_03092	0.52	+0.9
3,241,518	+		CCNA_03092	0.52	-0.1
3,241,518	+		CCNA_03092	0.52	-0.1
3,241,526	-		CCNA_03092	0.53	-1.5
3,241,587	-		CCNA_03092	0.57	+1.7
3,241,589	+		CCNA_03092	0.57	-1.0
3,241,589	+		CCNA_03092	0.57	-1.3
3,241,589	+		CCNA_03092	0.57	+1.7
3,241,589	+		CCNA_03092	0.57	-0.7
3,241,589	+		CCNA_03092	0.57	-2.6
3,241,589	+		CCNA_03092	0.57	-0.7
3,241,589	+		CCNA_03092	0.57	-0.1
3,241,597	-		CCNA_03092	0.58	-3.1
3,241,597	-		CCNA_03092	0.58	-2.4
3,241,597	-		CCNA_03092	0.58	-0.9
3,241,597	-		CCNA_03092	0.58	+0.2
3,241,624	+		CCNA_03092	0.60	+0.1
3,241,624	+		CCNA_03092	0.60	-1.0
3,241,637	+		CCNA_03092	0.61	-0.3
3,241,637	+		CCNA_03092	0.61	-0.5
3,241,637	+		CCNA_03092	0.61	-2.5
3,241,637	+		CCNA_03092	0.61	-2.2
3,241,645	-		CCNA_03092	0.61	-1.7
3,241,645	-		CCNA_03092	0.61	+1.7
3,241,645	-		CCNA_03092	0.61	-0.5
3,241,685	+		CCNA_03092	0.64	-1.2
3,241,693	-		CCNA_03092	0.65	-0.5
3,241,698	+		CCNA_03092	0.65	-1.9
3,241,705	-		CCNA_03092	0.66	-0.1
3,241,730	-		CCNA_03092	0.67	-1.7
3,241,760	+		CCNA_03092	0.70	+0.5
3,241,767	+		CCNA_03092	0.70	+1.1
3,241,772	+		CCNA_03092	0.71	-0.5
3,241,780	-		CCNA_03092	0.71	+1.1
3,241,780	-		CCNA_03092	0.71	+0.3
3,241,790	+		CCNA_03092	0.72	+0.1
3,241,813	+		CCNA_03092	0.73	-0.7
3,241,828	+		CCNA_03092	0.75	+0.2
3,241,839	+		CCNA_03092	0.75	+0.3
3,241,839	+		CCNA_03092	0.75	+1.4
3,241,839	+		CCNA_03092	0.75	-0.0
3,241,839	+		CCNA_03092	0.75	+0.4
3,241,839	+		CCNA_03092	0.75	-0.1
3,241,839	+		CCNA_03092	0.75	+0.5
3,241,839	+		CCNA_03092	0.75	+3.7
3,241,847	-		CCNA_03092	0.76	-0.9
3,241,847	-		CCNA_03092	0.76	-0.7
3,241,847	-		CCNA_03092	0.76	-0.4
3,241,847	-		CCNA_03092	0.76	-0.8
3,241,847	-				+0.1
3,241,847	-		CCNA_03092	0.76	-0.5
3,241,876	-		CCNA_03092	0.78	+0.7
3,241,876	-		CCNA_03092	0.78	+0.7
3,241,885	-		CCNA_03092	0.79	-1.7
3,241,910	+		CCNA_03092	0.81	-1.8
3,241,958	+		CCNA_03092	0.84	-1.0
3,241,958	+		CCNA_03092	0.84	-1.1
3,241,964	+		CCNA_03092	0.84	-0.7
3,241,966	-		CCNA_03092	0.85	-0.6
3,241,996	+		CCNA_03092	0.87	+1.7
3,241,996	+		CCNA_03092	0.87	+0.4
3,242,004	-		CCNA_03092	0.87	-0.1
3,242,014	+		CCNA_03092	0.88	+1.1
3,242,019	-		CCNA_03092	0.88	-2.4
3,242,026	+		CCNA_03092	0.89	+0.3
3,242,026	+		CCNA_03092	0.89	+0.3
3,242,034	-		CCNA_03092	0.90	-1.1
3,242,034	-		CCNA_03092	0.90	+0.9
3,242,052	+				+0.0
3,242,057	+				-0.8
3,242,075	+				+2.7
3,242,108	+				-1.1
3,242,126	-				+1.7
3,242,128	+				+3.7
3,242,158	+				-2.5
3,242,158	+				-0.2
3,242,177	+				-0.9
3,242,178	+				-2.1
3,242,183	+				-1.1
3,242,183	+				-0.3
3,242,183	+				-0.3
3,242,183	+				-1.7
3,242,183	+				+2.1
3,242,183	+				-1.9
3,242,186	-				+2.3
3,242,190	+				+1.3
3,242,191	-				+1.7
3,242,191	-				-0.8
3,242,191	-				-0.8
3,242,191	-				-0.0
3,242,191	-				-1.7
3,242,191	-				+0.1
3,242,191	-				+1.1
3,242,201	-				+1.1
3,242,222	+				+1.9
3,242,236	+				-0.1
3,242,281	-				-1.5
3,242,281	-				-2.5
3,242,294	+		CCNA_03093	0.13	+0.2
3,242,297	+		CCNA_03093	0.13	-0.1
3,242,297	+		CCNA_03093	0.13	-0.1
3,242,297	+		CCNA_03093	0.13	+0.1
3,242,297	+		CCNA_03093	0.13	-0.4
3,242,297	+		CCNA_03093	0.13	-0.3
3,242,305	-		CCNA_03093	0.15	-0.3
3,242,305	-		CCNA_03093	0.15	-1.2
3,242,305	-		CCNA_03093	0.15	-1.1
3,242,349	-		CCNA_03093	0.26	-1.1
3,242,349	-		CCNA_03093	0.26	-0.5
3,242,351	+		CCNA_03093	0.26	-0.4
3,242,356	+		CCNA_03093	0.27	+0.3
3,242,356	+		CCNA_03093	0.27	-2.3
3,242,356	+		CCNA_03093	0.27	-0.6
3,242,428	-		CCNA_03093	0.44	-0.0
3,242,429	-		CCNA_03093	0.45	+1.1
3,242,434	+		CCNA_03093	0.46	+0.1
3,242,442	-		CCNA_03093	0.48	+2.1
3,242,442	-		CCNA_03093	0.48	-1.9
3,242,446	+		CCNA_03093	0.49	-0.1
3,242,452	-		CCNA_03093	0.50	-1.8
3,242,461	+		CCNA_03093	0.52	+0.1
3,242,475	+		CCNA_03093	0.56	-1.7
3,242,485	+		CCNA_03093	0.58	-0.3
3,242,541	-		CCNA_03093	0.71	+0.3
3,242,567	-		CCNA_03093	0.77	-3.6
3,242,567	-		CCNA_03093	0.77	-1.0
3,242,569	-		CCNA_03093	0.78	+0.7
3,242,589	-		CCNA_03093	0.83	-0.5
3,242,591	+		CCNA_03093	0.83	-0.4
3,242,599	-		CCNA_03093	0.85	-0.3
3,242,661	+				+0.2
3,242,661	+				+0.5
3,242,684	-				+1.7
3,242,685	+				-2.0
3,242,685	+				+2.7
3,242,693	-				-1.1
3,242,713	+				+1.4
3,242,736	+				-1.2
3,242,737	+				+0.7
3,242,837	-				+1.1
3,242,841	-				-0.5
3,242,879	-				+2.2
3,242,939	-				+0.1
3,242,939	-				-1.3
3,242,941	+				+0.1
3,243,018	+		CCNA_03094	0.15	+1.1
3,243,033	+		CCNA_03094	0.16	-0.7
3,243,043	+		CCNA_03094	0.17	-0.9
3,243,051	-		CCNA_03094	0.18	+3.2
3,243,051	-		CCNA_03094	0.18	+1.0
3,243,051	-		CCNA_03094	0.18	+0.2
3,243,131	+		CCNA_03094	0.25	-1.0
3,243,158	+		CCNA_03094	0.28	+1.7
3,243,173	-		CCNA_03094	0.29	-2.0